https://github.com/soedinglab/mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

alignment bioinformatics blast linclust metagenomics mmseqs profile-search sequence-clustering sequence-search taxonomy

Last synced: 05 Oct 2025

https://github.com/soedinglab/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

alignment bioinformatics blast linclust metagenomics mmseqs profile-search sequence-clustering sequence-search taxonomy

Last synced: 05 May 2025

https://github.com/soedinglab/mmseqs2-app

MMseqs2 app to run on your workstation or servers

alphafold2 bioinformatics colabfold docker docker-compose electron foldseek golang mmseqs profile-search sequence-search structure-search vue

Last synced: 06 Apr 2025

https://github.com/soedinglab/mmseqs

alignment cpp mmseqs opensource sequence-clustering

Last synced: 27 Apr 2025

https://github.com/cmzmasek/repseq

Representative sequence selection for large bioinformatics datasets

bioinformatics cd-hit cdhit clustering computational-biology evolution fasttree hmmer iq-tree iqtree2 machine-learning mafft mmseqs mmseqs2 phylogenetics phyloxml proteins vaccinology virology

Last synced: 24 May 2026

https://github.com/cmzmasek/vfam_trees

Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.

bioinformatics computational-biology dna-virus evolution iqtree mafft maximum-likelihood mmseqs multi-marker-concatenation phylogenetics phyloxml pipeline rna-virus taxonomy trimal viral-evolution virology

Last synced: 24 May 2026