Projects in Awesome Lists tagged with msigdb
A curated list of projects in awesome lists tagged with msigdb .
https://github.com/igordot/msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
enrichment-analysis gene-sets genomics gsea msigdb pathway-analysis pathways
Last synced: 19 Feb 2026
https://github.com/greenelab/biobombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
autoencoder biobombe compression gene-expression gene-sets hetnet msigdb network tcga
Last synced: 13 Oct 2025
https://github.com/BIMSBbioinfo/RCAS
R package for the RNA Centric Annotation System (RCAS)
bioconductor cage coverage-distribution go interactive-plots modification motif-discovery msigdb par-clip protein-rna-interactions reporting rna
Last synced: 06 May 2025
https://github.com/bio2bel/msig
Integration of pathway-related information from MSigDB in BEL
gene-set-enrichment msig msigdb pathway-analysis
Last synced: 29 Jan 2026
https://github.com/genepattern/tcga.sampleselection
TCGA.SampleSelection wrapper module for GenePattern.
genepattern-module msigdb preprocess tcga utilities
Last synced: 20 Feb 2026
https://github.com/acastanza/seqformat
RNA-seq Preprocessing for GSEA
gsea msigdb rna-seq rna-seq-analysis rna-seq-pipeline
Last synced: 20 Oct 2025
