Projects in Awesome Lists tagged with multiplexed-imaging
A curated list of projects in awesome lists tagged with multiplexed-imaging .
https://github.com/angelolab/ark-analysis
Integrated pipeline for multiplexed image analysis
Last synced: 14 Jan 2026
https://github.com/camlab-bioml/astir
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
imaging-mass-cytometry machine-learning multiplexed-imaging
Last synced: 08 Mar 2026
https://github.com/mahmoodlab/MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
cell-annotation mpif multiplexed-imaging
Last synced: 07 May 2025
https://github.com/mahmoodlab/maps
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
cell-annotation mpif multiplexed-imaging
Last synced: 28 Apr 2025
https://github.com/camlab-bioml/rakaia
Scale interactive spatial omics in the browser to thousands of images | https://rakaia.io/
browser histology imaging-mass-cytometry multiplexed-imaging omics spatial-analysis spatial-biology spatial-data spatial-proteomics spatial-transcriptomics viewer visium xenium zarr
Last synced: 08 Mar 2026
https://github.com/calico/spatial_lda
Probabilistic topic model for identifying cellular micro-environments.
cancer-imaging cancer-imaging-research multiplexed-imaging
Last synced: 16 Jan 2026
https://github.com/nadeemlab/smprofiler
Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)
biomarker-discovery clinical-workflow deeplearning-ai histology-images image-analysis multiplexed-imaging python single-cell-analysis spatial-analysis spatial-data spatial-proteomics spatial-transcriptomics tumor-microenvironment
Last synced: 16 Sep 2025
https://github.com/mmasoud1/histojs
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
cell-cell-interaction cell-segmentation digital-slide-archive image-processing mibiscope multichannel multiplexed-imaging multiplexed-imaging-analysis ome-tiff phenotyping proteomics proteomics-data-analysis single-cell spatial-biology spatial-data-analysis whole-slide-imaging
Last synced: 15 Oct 2025
https://github.com/complextissue/spatiomic
A Python package for unsupervised analysis of spatial (prote)omics data.
image-analysis multiplexed-imaging pathology pathoplex scverse spatial-proteomics spatial-statistics
Last synced: 05 Mar 2026
