Projects in Awesome Lists tagged with ncbi-database
A curated list of projects in awesome lists tagged with ncbi-database .
https://github.com/tlatkowski/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
annotated-genes autism autism-data data-mining deep-learning feature-detection feature-extraction feature-selection features-extraction fisher-score gene-annotation gene-expression gene-expression-profiles google-colab microarray-data ncbi-database neural-network numpy python3 ttest
Last synced: 30 Apr 2025
https://github.com/banhbio/taxonomy.jl
Julia package to handle the NCBI Taxonomy database.
biodiversity bioinformatics julia ncbi ncbi-database ncbi-taxonomy phylogeny taxonomy
Last synced: 25 Aug 2025
https://github.com/androidbeingx/omic_research
Python class project in collab with @heloint and @anivalle. Using Entrez, Seq.io, regex, pandas
entrez investigation ncbi-database pandas protein python regex
Last synced: 30 Apr 2026
https://github.com/tracywong117/ncbi-get-all-children-organism-under-ancestor
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
bio-data bio-dataset dataset ncbi ncbi-database ncbi-sra ncbi-taxonomy taxonomy-database
Last synced: 05 Jul 2025
https://github.com/applicativesystem/sra-explorer
explore sra databases and sequence retrieval
bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit
Last synced: 15 Aug 2025
https://github.com/ibchgenomic/sra-explorer
explore sra databases and sequence retrieval
bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit
Last synced: 18 Mar 2025
https://github.com/sciencegenome/tair-pubmed-connect
tair id to pubmed links for articls, genes, annotations, locus tag
genome-analysis genome-annotation literature-modelling ncbi ncbi-database ncbi-sra pubmed pubmed-literature tair tair3 topic-analysis
Last synced: 18 Mar 2025
https://github.com/fhdsl/anvil_sra_data
Pull Sequence Read Archive (SRA) data into AnVIL
anvil course genomics module ncbi-database sequence-read-archive
Last synced: 22 Apr 2026
https://github.com/tmiland/pubchem_compound.sh
Script to retrieve compound from the pubchem database
bash compound download ncbi ncbi-database shell shell-script
Last synced: 30 Apr 2026
https://github.com/applicativesystem/tair-pubmed-connect
tair id to pubmed links for articls, genes, annotations, locus tag
genome-analysis genome-annotation literature-modelling ncbi ncbi-database ncbi-sra pubmed pubmed-literature tair tair3 topic-analysis
Last synced: 15 Aug 2025