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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with next-generation-sequencing
A curated list of projects in awesome lists tagged with next-generation-sequencing .
https://github.com/ablab/spades
SPAdes Genome Assembler
genome-assembly illumina metagenome-assembly next-generation-sequencing sequence-assembler sequencing transcriptome-assembly
Last synced: 02 Aug 2024
https://github.com/openbiox/awosome-bioinformatics
A curated list of resources for learning bioinformatics.
bioinformatics data-analysis next-generation-sequencing
Last synced: 02 Aug 2024
https://github.com/sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 01 Aug 2024
https://github.com/sanger-pathogens/snp-sites
Finds SNP sites from a multi-FASTA alignment file
bioinformatics bioinformatics-pipeline genomics global-health infectious-diseases next-generation-sequencing pathogen research sequencing
Last synced: 01 Aug 2024
https://github.com/nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus
Last synced: 06 Aug 2024
https://github.com/Cibiv/NextGenMap
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.
c-plus-plus-11 next-generation-sequencing opencl short-read-mapper
Last synced: 02 Aug 2024
https://github.com/TimoLassmann/samstat
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
bioinformatics next-generation-sequencing quality-control
Last synced: 02 Aug 2024
https://github.com/chgibb/PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
alignment analysis bam bam-files bioinformatics bioinformatics-analysis bioinformatics-tool circos circos-graphs circos-plot dna electron host next-generation-sequencing ngs pathogen phat quality-control snps visualization
Last synced: 02 Aug 2024
https://github.com/gmauro/presta
Presta handles sequencing data produced from a large scale NGS Core facility. It leverages a reliable distributed task queue to create a messages-driven automation system. Presta is focused on real-time operations, but supports scheduling as well.
message-queue next-generation-sequencing python python-library
Last synced: 02 Oct 2024
