https://github.com/monarch-initiative/ontogpt

LLM-based ontological extraction tools, including SPIRES

ai chat-gpt data-modeling gpt-3 information-extraction language-models large-language-models linkml llm monarchinitiative named-entity-recognition ner nlp oaklib obofoundry relation-extraction

Last synced: 08 Apr 2025

https://github.com/incatools/ontology-access-kit

Ontology Access Kit: A python library and command line application for working with ontologies

apis geneontology monarchinitiative oaklib obofoundry ontology ontology-api owl python rdf semantic-web

Last synced: 12 Apr 2026

https://github.com/incatools/semantic-sql

SQL and SQLite builds of OWL ontologies

linkml oaklib obofoundry ontologies owl relation-graph sparql sql

Last synced: 05 Apr 2025

https://github.com/cmungall/semantic-llama

A knowledge extraction tool that uses a large language model to extract semantic information from text

ai knowledge-extraction language-models linkml oaklib obofoundry

Last synced: 05 May 2025

https://github.com/knowledge-graph-hub/kg-microbe

anatomical-knowledge cell-shapes chebi chemicals data-modeling environments envo go knowledge-graph media metabolism microbiology named-entity-recognition ncbitaxonomy nlp oaklib phenotypes robot traits

Last synced: 12 Jan 2026

https://github.com/incatools/oakx-plugin-cookiecutter

cookiecutter for OAK plugins

cookiecutter oaklib plugins

Last synced: 09 Jun 2026