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Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with openscience

A curated list of projects in awesome lists tagged with openscience .

https://github.com/ethanwillis/zotero-scihub

A plugin that will automatically download PDFs of zotero items from sci-hub

openscience scihub zotero

Last synced: 20 Mar 2025

https://github.com/openpmd/openpmd-api

:floppy_disk: C++ & Python API for Scientific I/O

adios cpp17 file-handling hdf5 hpc metadata mpi opendata openpmd openscience python3 research

Last synced: 15 Apr 2025

https://github.com/centerforopenscience/ember-osf-web

Ember front-end for the Open Science Framework

ember javascript openscience osf science

Last synced: 04 Apr 2025

https://github.com/expyriment/expyriment

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

cognitive-science experiment-control neuroimaging-experiments neuroscience openscience opensesame psychology psychology-experiments python-library science stimulus-presentation

Last synced: 14 Mar 2025

https://github.com/centerforopenscience/share

SHARE is building a free, open, data set about research and scholarly activities across their life cycle.

data elasticsearch harvest-data metadata openscience python scholarly-communication science

Last synced: 05 Apr 2025

https://github.com/openpmd/openpmd-standard

:notebook: Open Standard for Particle-Mesh Data

community document fileformat openpmd openscience research standardization

Last synced: 23 Feb 2025

https://github.com/aokellermann/nexus-now

Access scientific literature in your browser using standard template construct, an IPFS-backed website for nexus search.

browser-extension chrome-extension edge-extension firefox-addon firefox-extension nexus-search open-access openscience standard-template-construct webextension

Last synced: 05 Jul 2025

https://github.com/openpmd/openpmd-viewer

:snake: Python visualization tools for openPMD files

community jupyter-notebook openpmd openscience research visualization

Last synced: 16 May 2025

https://github.com/centerforopenscience/waterbutler

WaterButler is a Python web application for interacting with various file storage services via a single RESTful API, developed at Center for Open Science.

async openscience python science storage-provider tornado

Last synced: 05 Apr 2025

https://github.com/modenaxe/msk-STAPLE

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

biomechanics bone-geometries bone-morphological-analysis computational-biology computer-science kinematics kinetics lower-limb-models openscience science skeleton

Last synced: 08 Dec 2025

https://github.com/CenterForOpenScience/waterbutler

WaterButler is a Python web application for interacting with various file storage services via a single RESTful API, developed at Center for Open Science.

async openscience python science storage-provider tornado

Last synced: 27 Jul 2025

https://github.com/mouseland/stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images

neuroscience openscience vision-science

Last synced: 08 Apr 2025

https://github.com/modenaxe/msk-staple

STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.

biomechanics bone-geometries bone-morphological-analysis computational-biology computer-science kinematics kinetics lower-limb-models openscience science skeleton

Last synced: 02 Aug 2025

https://github.com/mouseland/stringer-pachitariu-et-al-2018a

Recordings of 10k neurons during spontaneous behaviors

neuroscience openscience

Last synced: 10 Jul 2025

https://github.com/aokellermann/zotero-nexus

Access scientific literature in Zotero using standard template construct, an IPFS-backed website for nexus search.

nexus-search open-access openscience standard-template-construct

Last synced: 07 May 2025

https://github.com/vlucet/rgovcan

Easy access to the Canadian Open Government Portal

api-wrapper canada openscience package r

Last synced: 23 Mar 2025

https://github.com/oxinabox/datadepsgenerators.jl

Utility for developers to help define DataDeps registration blocks, for reusing existing Data with DataDeps.jl

data-management opendata openscience

Last synced: 02 Jan 2026

https://github.com/openchemistry/materialsdatabank

An information portal for 3D atomic electron tomography data

data-management material-science openscience tomography

Last synced: 25 Apr 2025

https://github.com/andim/evolimmune

Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"

biophysics openscience

Last synced: 24 Dec 2025

https://github.com/openpmd/openpmd-projects

:clipboard: Overview on Projects around openPMD

collection community fileformat libraries openpmd openscience

Last synced: 23 Feb 2025

https://github.com/epiforecasts/covid19.nhs.data

Trust-level COVID-19 hospitalisations in England

covid19 hospitalisations local-authority nhs openscience r-package uk

Last synced: 14 Jun 2025

https://github.com/openpmd/openpmd-visit-plugin

:telescope: Plugin allowing VisIt to read openPMD files

community hpc openpmd openscience research visit visualization vtk

Last synced: 21 Apr 2025

https://github.com/openpmd/openpmd-validator

:ballot_box_with_check: Validator and Example Scripts

community fileformat openpmd openscience research validation

Last synced: 24 Oct 2025

https://github.com/openpmd/openpmd-converter

:arrows_clockwise: Useful Converter Tools for openPMD Files

community converter fileformat openpmd openscience research tools

Last synced: 23 Feb 2025

https://github.com/amchagas/open-hardware-supply

having a closer look on how OSH papers are evolving over time

openscience opensource opensourcehardware

Last synced: 21 Mar 2025

https://github.com/jcolomb/HCS_analysis

This is an open science project, here the code to analyse data obtained from mice home cage monitoring (especially homecagescan,HCS, cleversys Inc.)

analyse-data behavior-analysis metadata-information open-source openscience r shinyapps

Last synced: 06 May 2025

https://github.com/seabbs/covidinterventionreview

Adoption and impact of non-pharmaceutical interventions for COVID-19

covid-19 interventions openscience reproducible-research rstats

Last synced: 21 Jun 2025

https://github.com/neelsoumya/teaching_reproducible_science_r

Material and notes for teaching reproducible science in R

openscience r reproducible-research rmarkdown rstudio teaching-materials

Last synced: 25 Apr 2025

https://github.com/coderefinery/hpc-containers

Lesson about containers for HPC with focus on Apptainer.

apptainer hpc openscience singularity

Last synced: 30 Jan 2026

https://github.com/nok/openml-cli

Use the command line tool `openml` to interact with the official API of OpenML.

cli datasets openml openscience

Last synced: 22 Mar 2025

https://github.com/opengeos/open-science

Training materials for the Open Science Workshop and Symposium at the University of Tennessee, Knoxville

github-config jupyter opendata openscience opensource python

Last synced: 06 Apr 2025

https://github.com/openpmd/openpmd-updater

:arrow_double_up: Update openPMD files to newer versions of the openPMD standard

community fileformat modernizer openpmd openscience research updater

Last synced: 21 Apr 2025

https://github.com/sandyherho/tutoreksplor

Materi pelatihan eksplorasi data menggunakan R

openscience pemrograman r reproducible-science statistika tutorial

Last synced: 16 Jan 2026

https://github.com/andim/optimmune

Source code accompanying the paper "How a well-adapted immune system is organized"

biophysics openscience

Last synced: 24 Dec 2025

https://github.com/ivanhercaz/wikidata-iatext

resultados del proyecto Wikidata-IATEXT | results of the Wikidata-IATEXT project

iatext openscience python research research-data research-project scholia sparql ulpgc wikidata

Last synced: 18 Mar 2025

https://github.com/nasa-jpl/itslive-web

NASA ITS_LIVE website

glaciology itslive nasa openscience

Last synced: 20 Sep 2025

https://github.com/geco-bern/phenoeos

Relationships between EOS and Anet

opendata openscience publication

Last synced: 30 Oct 2025

https://github.com/elianhugh/openscithesis

Cross-examining open science policies in journals, contrasting with perceived open science barriers in university

openaccess openscience sherpa

Last synced: 10 Mar 2025

https://github.com/willingc/willing-consulting-2022

Carol's blog and Willing Consulting Website

jupyter open-source openscience people python

Last synced: 05 Apr 2025

https://github.com/andim/transitions-paper

Source code accompanying the paper "Transitions in optimal adaptive strategies for populations in fluctuating environments"

biophysics openscience

Last synced: 24 Dec 2025

https://github.com/h-fuzzy-logic/data-analytics-spring

Open data and cloud computing to answer the question: Are we losing our spring days?

aws-athena aws-glue-crawler aws-s3 jupyter openscience pandas python seaborn

Last synced: 02 Apr 2025

https://github.com/dataobservatory-eu/contributors

Contributors' Manual for the Data Observatories and Open Collections

opendata openscience

Last synced: 05 May 2025

https://github.com/trybnetic/line-perception

Materials for an experiment about the perception of nonlinear lines

openscience preregistration

Last synced: 04 Mar 2025

https://github.com/egonw/fopworkshop

FAIR, Open , and Proprietary data workshop

fair fair-data opendata openscience workshop

Last synced: 04 Feb 2026

https://github.com/andim/paper-tcellexp

Source code accompanying the paper "Regulation of T cell expansion by antigen presentation dynamics "

biophysics openscience

Last synced: 24 Dec 2025

https://github.com/andim/paper-bayesimmune

Source code accompanying the paper "How a well-adapting immune system remembers"

biophysics openscience

Last synced: 24 Dec 2025

https://github.com/seabbs/hpru-blog-post-gettbinr

A blog post on getTBinR for the HPRU Evaluation of Interventions blog

bcg gettbinr openscience rstats tuberculosis

Last synced: 02 Feb 2026