Projects in Awesome Lists tagged with openslide

https://github.com/libvips/libvips

A fast image processing library with low memory needs.

c cpp gif graphicsmagick heic image-processing imagemagick jpeg libvips nifti openexr openslide pdf pdfium png svg tiff webp

Last synced: 12 May 2025

https://github.com/GoogleCloudPlatform/wsi-to-dicom-converter

Conversion tool/library for converting whole slide images to DICOM

dicom openslide wsi

Last synced: 14 May 2025

https://github.com/googlecloudplatform/wsi-to-dicom-converter

Conversion tool/library for converting whole slide images to DICOM

dicom openslide wsi

Last synced: 09 Apr 2025

https://github.com/haranrk/digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi

Last synced: 13 Sep 2025

https://github.com/haranrk/DigiPathAI

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

cancer-research deep-learning gui medical-image-analysis openslide python segmentation wsi

Last synced: 06 May 2025

https://github.com/jgamper/compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

computational-pathology medical-imaging openslide pathology-image slide-images whole-slide-image whole-slide-imaging wsis

Last synced: 05 Apr 2026

https://github.com/lucasrla/wsi-preprocessing

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

fastai histopathology libvips openslide pathology preprocessing pytorch pyvips whole-slide-imaging wsi

Last synced: 12 Apr 2025

https://github.com/girder/large_image_wheels

manylinux wheel files for girder/large_image dependencies

binary gdal glymur libtiff libvips mapnik openslide openslide-python pylibtiff pyproj python-javabridge pyvips wheels

Last synced: 28 Jan 2026

https://github.com/andreped/vsi2tif

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

bftools bioformats cellsens converter cucim fast generic olympus openslide pyfast pyramidal pyvips tif tiff vips vsi wsi

Last synced: 18 Jul 2025

https://github.com/biologytools/biogtk

A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

bio-formats biology cross-platform geojson gtk image-stacks imagej imagej-roi imagej-tiff microscopy omero openslide plugins qupath roi sam-2 segment-anything segment-anything-model whole-slide-image

Last synced: 15 May 2025

https://github.com/insightsoftwareconsortium/itkioopenslide

An ITK ImageIO module for the OpenSlide library.

itk-module microscopy openslide openslide-python

Last synced: 14 Jul 2025

https://github.com/aignostics/python-sdk

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

aignostics atlas dicom digital-pathology image-data-commons machine-learning marimo medical-imaging nicegui oe-python-template openslide pydantic pydicom qupath typer uv whole-slide-imaging