https://github.com/R4EPI/sitrep

Report templates and helper functions for applied epidemiology

epidemiology msf outbreaks r-package report-generator

Last synced: 30 Jul 2025

https://github.com/biostats-dev/ggsurveillance

Tools And ggplot Extensions For Infectious Disease Surveillance And Outbreak Investigation

epidemiology infectious-disease-surveillance infectious-diseases outbreaks r r-package rstats

Last synced: 20 Feb 2026

https://github.com/epiverse-trace/linelist

R package for handling linelist data

data data-structures epidemiology epiverse outbreaks r r-package sdg-3 structured-data

Last synced: 06 May 2025

https://github.com/bu-isciii/bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

bacterial-genomes bacterial-wgs-training genome nextflow ngs-analysis outbreak-detection outbreaks sequencing wgs wgs-analysis

Last synced: 10 Feb 2026

https://github.com/epiverse-trace/simulist

An R package for simulating line lists

epidemiology epiverse linelist outbreaks r r-package

Last synced: 26 Jul 2025

https://github.com/reconhub/recon-helpdesk

Open an issue in this repository if you have general questions about RECON packages

epidemiology helpdesk outbreaks recon

Last synced: 19 Feb 2026

https://github.com/avallecam/incidenceflow

incidence outbreaks tidyverse workflow

Last synced: 24 Aug 2025

https://github.com/sempwn/cr0eso

Bayesian SEIR model fitting to multiple facility outbreaks

bayesian-inference covid-19 outbreaks r0-estimation

Last synced: 09 Feb 2026

https://github.com/globaldothealth/olm

Office for Linelist Management

briefing-report epidemiology linelist outbreaks

Last synced: 24 Jul 2025