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Projects in Awesome Lists tagged with pangenomics
A curated list of projects in awesome lists tagged with pangenomics .
https://github.com/dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 16 Nov 2024
https://github.com/algbio/GraphChainer
An accurate aligner of long reads to a variation graph, based on co-linear chaining
long-reads pangenomics read-aligners variation-graph
Last synced: 16 Nov 2024
https://github.com/at-cg/minichain
Long-read aligner to pangenome graphs
alignment long-reads pangenomics
Last synced: 16 Nov 2024
https://github.com/dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 16 Nov 2024
https://github.com/gcbl-niab/bos_indicus_pangenome_10x
Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
Last synced: 18 Nov 2024
https://github.com/dubssieg/rs-pancat-compare
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-calculation distance-measures graph-distance pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 26 Nov 2024
https://github.com/gauravcodepro/pangenomes-metagenomes
a workflow for complete analysis of bacterial metagenomes and pagenome graphs and direct viewing in panchae. It will also analyze metagenomes from both illumina and long reads
bacterial-genomes bioinformatics metagenomes metagenomics-data pangenomics pangraphs
Last synced: 09 Nov 2024
https://github.com/applicativesystem/rust-pangenome-matcher
rust pangenome matcher
bioinformatics genome-alignment genome-analysis genome-bioinformatics pangenome-alignment pangenomic-analysis pangenomics
Last synced: 16 Dec 2024
https://github.com/biosustain/pankb_llm
An LLM-based pangenomics chatbot integrated into the PanKB website.
azure chatbot cosmosdb genai llm mongodb pangenomics streamlit vectordb
Last synced: 15 Nov 2024
https://github.com/urbanslug/junctions
Compare pangenomes using ED-Strings
elastic-degenerate-string pangenomics
Last synced: 26 Nov 2024
https://github.com/gauravcodepro/pangenomemetagenomicsnormalizer
a pangenome metagenomics normalizer, given a gene ontology based presence and absence and a species file, it first summarizes the count across the species and then takes the count of the gene ontologies and present a ratio The higher the ratio the more presence of that ontology across the species.
bacterial-genome-analysis bacterialmetagenomics bioinformatics fungal-metagenomics metagenomics metagenomics-counts pangenomics
Last synced: 09 Nov 2024