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An open API service indexing awesome lists of open source software.

Projects in Awesome Lists tagged with pdb

A curated list of projects in awesome lists tagged with pdb .

https://github.com/icsharpcode/ilspy

.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!

c-sharp decompile decompiler decompiler-engine dotnet dotnetcore ilspy mono pdb unity

Last synced: 12 May 2025

https://github.com/icsharpcode/ILSpy

.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!

c-sharp decompile decompiler decompiler-engine dotnet dotnetcore ilspy mono pdb unity

Last synced: 14 Mar 2025

https://github.com/inducer/pudb

Full-screen console debugger for Python

bpython debug debugger ipython pdb pytest pytest-plugin python urwid

Last synced: 14 May 2025

https://github.com/pdbpp/pdbpp

pdb++, a drop-in replacement for pdb (the Python debugger)

completion debugger pdb python syntax-highlighting

Last synced: 26 Mar 2025

https://github.com/crosire/blink

A tool which allows you to edit source code of any MSVC C++ project live at runtime

c-plus-plus linker live-coding pdb

Last synced: 10 Oct 2025

https://github.com/plasma-umass/chatdbg

ChatDBG - AI-assisted debugging. Uses AI to answer 'why'

c-programming cpp-programming debugger debugging-tools gpt-3 lldb pdb python

Last synced: 10 Jun 2025

https://github.com/spiside/pdb-tutorial

A simple tutorial about effectively using pdb

debugger pdb python tutorial

Last synced: 28 Jan 2026

https://github.com/horsicq/PDBRipper

PDBRipper is a utility for extract an information from PDB-files.

hacktoberfest hacktoberfest2023 pdb pdb-files pdb-parser reverse-engineering

Last synced: 09 Jul 2025

https://github.com/horsicq/pdbripper

PDBRipper is a utility for extract an information from PDB-files.

hacktoberfest hacktoberfest2023 pdb pdb-files pdb-parser reverse-engineering

Last synced: 04 Oct 2025

https://github.com/plasma-umass/ChatDBG

ChatDBG - AI-assisted debugging. Uses AI to answer 'why'

c-programming cpp-programming debugger debugging-tools gpt-3 lldb pdb python

Last synced: 04 Apr 2025

https://github.com/sakhnik/nvim-gdb

Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB

bashdb gdb lldb neovim nvim-gdb pdb

Last synced: 14 Mar 2025

https://github.com/pharmai/plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

bioinformatics docker openbabel pdb plip protein-structure python-bindings scientific-computing singularity

Last synced: 18 Feb 2026

https://github.com/biojava/biojava

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

bioinformatics genomics java parser-library pdb protein-data-bank protein-modification protein-sequences protein-structure sequence-alignment structural-bioinformatics structure-alignment

Last synced: 17 Dec 2025

https://github.com/mixaill/fakepdb

Tool for PDB generation from IDA Pro database

cpp debugging ida idapython llvm pdb

Last synced: 15 May 2025

https://github.com/charnley/rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

alignment assignment atoms kabsch molecule pdb reordering rmsd structure xyz

Last synced: 14 May 2025

https://github.com/haddocking/pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

bioinformatics pdb protein python rcsb structural-bioinformatics structural-biology utrecht-university

Last synced: 10 Jan 2026

https://github.com/getsentry/pdb

A parser for Microsoft PDB (Program Database) debugging information

debugging microsoft-pdb pdb rust-library tag-production

Last synced: 12 Dec 2025

https://github.com/ergrelet/windiff

Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.

diff insider nextjs ntoskrnl pdb portable-executable preview reverse-engineering rust syscalls undocumented web win32 windows

Last synced: 16 May 2025

https://github.com/ionelmc/python-remote-pdb

Remote vanilla PDB (over TCP sockets).

debugging pdb python

Last synced: 12 Apr 2025

https://github.com/jasonwhite/ducible

A tool to make Windows builds reproducible. (UNMAINTAINED)

build-automation dll linux pdb reproducible-builds visual-studio windows

Last synced: 17 Jan 2026

https://github.com/ergrelet/resym

Cross-platform tool that allows browsing and extracting C and C++ type declarations from PDB files.

cli cross-platform diff gui linux ntoskrnl pdb reverse-engineering rust symbols web windows

Last synced: 07 Apr 2025

https://github.com/rdk/p2rank

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

binding-sites bioinformatics drug-discovery groovy java ligand machine-learning mmcif molecular-structures p2rank pdb protein-ligand-docking protein-ligand-interactions protein-structure protein-surface proteins pymol random-forest structural-bioinformatics virtual-screening

Last synced: 12 Apr 2025

https://github.com/gotcha/vimpdb

Pdb and Vim integration

pdb python vim

Last synced: 07 Apr 2025

https://github.com/nblock/pdb-cheatsheet

A cheatsheet for the Python Debugger (pdb)

cheatsheet latex pdb python

Last synced: 25 Jul 2025

https://github.com/mmagnus/rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

bioinformatics pdb python rna rna-pdb rna-puzzle rna-structure rna-tools rosetta simrna

Last synced: 17 Jan 2026

https://github.com/dmaivel/ntoseye

Windows kernel debugger for Linux hosts running Windows under KVM/QEMU

disassembler gdb introspection kernel-debugger kvm linux memory ntos ntoskrnl pdb physical-memory qemu qemu-kvm rust windbg windows

Last synced: 05 Apr 2026

https://github.com/p0dalirius/pypdbdownload

A Python script to download PDB files associated with a Portable Executable (PE)

debug download microsoft pdb pe portable-executable tool

Last synced: 23 Apr 2025

https://github.com/p0dalirius/pdbdownload

A Python script to download PDB files associated with a Portable Executable (PE)

debug download microsoft pdb pe portable-executable tool

Last synced: 03 Apr 2025

https://github.com/holzhaus/rekordcrate

Library for parsing Pioneer Rekordbox device exports

parser pdb pioneer rekordbox

Last synced: 10 Apr 2025

https://github.com/molstar/vscoding-sequence

VSCode Extension for interactively visualising protein structure data in the editor

molecule molstar pdb pdb-files protein protein-structure structural-biology structure vscode vscode-extension

Last synced: 06 Apr 2025

https://github.com/BioJulia/BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures

bioinformatics biojulia biology julia pdb protein-structure structural-bioinformatics structural-biology

Last synced: 22 Jul 2025

https://github.com/biojulia/biostructures.jl

A Julia package to read, write and manipulate macromolecular structures

bioinformatics biojulia biology julia pdb protein-structure structural-bioinformatics structural-biology

Last synced: 30 Jan 2026

https://github.com/Holzhaus/rekordcrate

Library for parsing Pioneer Rekordbox device exports

parser pdb pioneer rekordbox

Last synced: 06 Oct 2025

https://github.com/mooerslab/pymolshortcuts

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

agile-programming agile-pymol aliases biomolecular-artwork efficient-programming ergonomic-keyword-use figure-making image-making molecular-artwork molecular-graphics pdb pml protein-structure-analysis pymol pymol-plugin pymol-python scripting shortcuts startup-script structural-bioinformatics

Last synced: 16 Mar 2026

https://github.com/mdmintz/pdbp

pdbp (Pdb+): A drop-in replacement for pdb and pdbpp. To replace "pdb", add "import pdbp" to an "__init__.py" file.

debugger debugging debugging-tool pdb python-debugger seleniumbase stacktrace traceback

Last synced: 07 Apr 2025

https://github.com/dotnet/symreader-converter

Converts between Windows PDB and Portable PDB formats.

converter crossplatform debugging managed pdb portable-pdb windows-pdb

Last synced: 05 Apr 2025

https://github.com/therealdreg/ida_vmware_windows_gdb

Helper script for Windows kernel debugging with IDA Pro on VMware + GDB stub (including PDB symbols)

debugging gdb ida-pro idapython kernel-debugging osdev pdb reverse-engineering vmware vmware-workstation windows

Last synced: 21 Mar 2025

https://github.com/therealdreg/ida_bochs_windows

Helper script for Windows kernel debugging with IDA Pro on native Bochs debugger (including PDB symbols)

bochs debugging ida-pro idapython instrumentation kernel-debugging osdev pdb reverse-engineering windows

Last synced: 21 Mar 2025

https://github.com/coddingtonbear/ircpdb

Remotely and collaboratively debug your Python application via an IRC channel.

collaboration collaborative debugger debugging irc pdb python

Last synced: 03 Sep 2025

https://github.com/nvelden/nglviewer

Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny

ngl nglviewer pdb protein-data-bank r shiny shiny-applications

Last synced: 11 Jun 2025

https://github.com/microsoft/sqlcallstackresolver

A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.

azuresql azuresqldb azuresqlmanagedinstance callstack debugging debugging-symbol msdia140 pdb pdb-files sqlserver sqlserver-2017 sqlserver-2019 sqlserver-2022 sre symbols tool xevent xevents

Last synced: 07 May 2025

https://github.com/microsoft/SQLCallStackResolver

A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.

azuresql azuresqldb azuresqlmanagedinstance callstack debugging debugging-symbol msdia140 pdb pdb-files sqlserver sqlserver-2017 sqlserver-2019 sqlserver-2022 sre symbols tool xevent xevents

Last synced: 08 Apr 2025

https://github.com/jgreener64/pdb-benchmarks

Benchmarking common tasks on proteins in various languages and packages

benchmarks bioinformatics comparison mmcif mmtf pdb pdb-files structural-bioinformatics

Last synced: 11 Apr 2025

https://github.com/ajkhoury/pdbfetch

Fetch PDB symbols directly from Microsoft's symbol servers

debug downloader go golang pdb portable-executable symbols

Last synced: 17 Jun 2025

https://github.com/benmezger/pydebug

Decorators for debugging Python

debug debugging pdb profile python tools

Last synced: 01 May 2025

https://github.com/douweschulte/pdbtbx

A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

atoms crystallography mmcif pdb pdb-parser pdbx-files rust rust-crate scientific

Last synced: 17 Mar 2025

https://github.com/mstange/pdb-addr2line

A Rust crate to symbolicate addresses from PDBs, like addr2line. Uses the `pdb` crate.

debugging pdb symbols

Last synced: 04 Apr 2025

https://github.com/avrabyt/st-speckmol

Streamlit Component for creating Speck molecular structures within Streamlit Web app.

bioinformatics molecules pdb python streamlit streamlit-component visualization

Last synced: 23 Apr 2026

https://github.com/ppillot/libmol

Single Page Web Application for displaying and studying molecular models

bioinformatics biological-structures education javascript molecular-graphics ngl pdb science vue

Last synced: 05 May 2025

https://github.com/isaacbernat/docker-pudb

Debug Python code within a Docker container remotely from your terminal using pudb

debug debugger debugging debugging-tool debugging-tools docker docker-compose dockerfile hacktoberfest ipdb pdb pudb python python2 python27 python3 telnet

Last synced: 16 Aug 2025

https://github.com/jetbrains/teamcity-symbol-server

TeamCity Symbol Server plugin

pdb symbols teamcity teamcity-plugin

Last synced: 19 Oct 2025

https://github.com/jschwinger233/pdbattach

Attach pdb to a running Python process.

attach debug gdb pdb python

Last synced: 07 May 2025

https://github.com/diasurgical/devilution-comparer

Small helper tool to aid comparing functions between devilution and the original binary

asm pdb

Last synced: 29 Apr 2025

https://github.com/therealdreg/symseghelper

Helper scripts for windows debugging with symbols for Bochs and IDA Pro (PDB files). Very handy for user mode <--> kernel mode

bochs ida-pro idapython kernel-debugging pdb windows

Last synced: 12 Oct 2025

https://github.com/pdb-operator/pdb-operator

Intelligent Pod Disruption Budget Management for Kubernetes

availability golang kubernetes kubernetes-operator operator pdb poddisruptionbudget

Last synced: 02 Apr 2026

https://github.com/clarkb7/annotate_lineinfo

Annotate IDA with source and line number information from a PDB

ida idapython pdb

Last synced: 05 Feb 2026

https://github.com/therealdreg/pdbdump_bochs

Dump PDB Symbols including support for Bochs Debugging Format (with wine support)

bochs debugging instrumentation kernel-debugging linux-support osdev pdb reverse-engineering windows wine

Last synced: 10 Apr 2025

https://github.com/muffinmad/emacs-pdb-capf

Completion-at-point function for pdb (Python debugger)

emacs pdb

Last synced: 14 Jul 2025

https://github.com/hng/biomolecularstructures.jl

The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.

bioinformatics blast julia mafft pdb

Last synced: 14 Apr 2025

https://github.com/lethalbit/libfortress

A library for reading DWARF, STABS, and other debugging formats.

debug-formats dwarf pdb stabs vax

Last synced: 07 Apr 2025

https://github.com/forentfraps/pe-signgen

Universal signature generation for any system function from all Windows Builds using Winbindex

binary malware-analysis microsoft msdn pattern pdb pe-exe reverse-engineering signature signature-generation windows x64 x86

Last synced: 24 Dec 2025

https://github.com/vmi-rs/isr

Intermediate Symbol Representation

dwarf isr pdb

Last synced: 16 Aug 2025

https://github.com/aranega/dbge

An extension to IPdb for Python >= 3.11 that supports bytecode stepping, sub-expression stepping/breakpoints, object-centric breakpoints and experimental evaluation stack manipulation

ast bytecode debugger ipdb ipython pdb python

Last synced: 30 Jun 2025

https://github.com/project-gemmi/periodic-table

Search PDB by elements.

mmcif pdb periodic-table

Last synced: 07 Mar 2026

https://github.com/mooerslab/orgpymolpysnips

Supports the use of PyMOL in literate programming in org-mode, which is best run in Emacs.

emacs emacs-jupyter literate-programming mmcif molecular-graphics org-babel org-mode pdb protein pymol

Last synced: 08 May 2025

https://github.com/biomadeira/biodownloader

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

bioinformatics cath cli fasta gff mmcif pdb pfam sifts

Last synced: 16 Jul 2025

https://github.com/deeprank/ponder

PointNet for Deep Rank: protein-protein interaction scoring using neural networks

deep-learning pdb point-cloud pointnet protein-protein-interaction structural-bioinformatics

Last synced: 14 Feb 2026

https://github.com/unixjunkie/edtsurf

mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/

fast mesh-generation molecular-surface pdb

Last synced: 12 Jul 2025

https://github.com/metaworm/pdb-viewer

PDB Viewer powered by Rust + WASM, high performance, no backend. https://pdbview.metaworm.site/ http://pdb.metaworm.site/

pdb pdb-files reverse-engineering

Last synced: 25 Feb 2026

https://github.com/justinmc/parse-pdb

A small utility for parsing PDB files into useable JSON

json molecular-data molecule pdb

Last synced: 11 Aug 2025

https://github.com/biojulia/mmtf.jl

A Julia package to read and write MMTF files

bioinformatics julia-package mmtf pdb rcsb

Last synced: 15 Feb 2026

https://github.com/orhanbalci/patoz

Protein Data Bank (pdb) file parser

bioinformatics nom parser pdb protein-data-bank protein-structure rust

Last synced: 11 Nov 2025

https://github.com/althonos/pyjess

Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.

bioinformatics catalytic-site cython-wrapper enzyme pdb protein-structure python python-interface python-library

Last synced: 11 Apr 2025

https://github.com/maulingmonkey/natvis-pdbs

A metabuild / build.rs compatible crate to embed .natvis debug visualizer files into your executable's .pdbs, for ease of debugging.

debug metabuild natvis pdb rust

Last synced: 07 Aug 2025