Projects in Awesome Lists tagged with peak-calling
A curated list of projects in awesome lists tagged with peak-calling .
https://github.com/nf-core/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
chip chip-seq chromatin-immunoprecipitation macs2 nextflow nf-core peak-calling pipeline workflow
Last synced: 19 Apr 2025
https://github.com/nanxstats/oneclust
🥇 Maximum homogeneity clustering for one-dimensional data
clustering-algorithm feature-engineering homogeneity peak-calling univariate-data
Last synced: 22 Apr 2025
https://github.com/rennelab/cnr-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
chip-seq-pipelines cutandrun cutandrun-seq cutrun genomics nextflow peak-calling
Last synced: 20 Feb 2025
https://github.com/jetbrains-research/chipseq-smk-pipeline
ChIP-Seq processing pipeline on snakemake
atac-seq chip-seq peak-calling pipeline quality-control snakemake visualization
Last synced: 20 Nov 2024
https://github.com/neurogenomics/peakyfinders
R package for mining, calling, and importing epigenomic peaks.
encode epigenomics gene-expression-omnibus genomics peak-calling r r-package
Last synced: 03 Apr 2025
https://github.com/jetbrains-research/washu
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
analysis bash chip-seq parallel-computing peak-calling pipeline qc qsub rna-seq visualization
Last synced: 14 Mar 2025