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Projects in Awesome Lists tagged with peptides
A curated list of projects in awesome lists tagged with peptides .
https://github.com/compomics/DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
deep-learning peptide-modification peptides proteomics retention-time
Last synced: 12 Nov 2024
https://github.com/nanxstats/protr
🧬 Toolkit for generating various numerical features of protein sequences
bioinformatics feature-engineering feature-extraction machine-learning peptides protein-sequences sequence-analysis
Last synced: 19 Dec 2024
https://github.com/xryanglab/RiboCode
release version
bioinformatics orfs peptides ribosome-profiling
Last synced: 20 Nov 2024
https://github.com/lkytal/predfull
This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
mass-spectrometry peptides spectrum tensorflow
Last synced: 12 Nov 2024
https://github.com/leonjessen/peptools
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
bioinformatics datascience encoding-peptides epitope-prediction-methods immunoinformatics immunological-bioinformatics peptide-data peptides r research rstats vaccine
Last synced: 19 Nov 2024
https://github.com/avaamini/protease_activity_analysis
Python toolkit and package for analyzing enzyme activity data
biochemistry chemical-biology database enzyme enzyme-kinetics peptide-data peptides protease
Last synced: 23 Oct 2024
https://github.com/pgarrett-scripps/peptacular
A spectacularly simple package for working with peptide sequences.
bioinformatics mass-spectrometry peptide-identification peptide-sequences peptides protein proteomics python
Last synced: 05 Dec 2024
https://github.com/ur-whitelab/peptidesim
Automated peptide simulation tool with gromacs, gromacswrapper, plumed
gromacs molecular-dynamics peptides
Last synced: 23 Nov 2024
https://github.com/joseph-ellaway/ramachandran_plotter
Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
dihedral-angles mmcif modern pdb peptides plot protein-data-bank protein-structure ramachandran ramachandran-plot structural-biology
Last synced: 19 Dec 2024
https://github.com/pgarrett-scripps/proteincleaverstreamlitapp
Protein Cleaver is a versatile tool for protein analysis and digestion.
digestion fasta mass-spectrometry peptide peptide-identification peptide-sequences peptides protein protein-sequences proteomics proteomics-data-analysis streamlit streamlit-cloud
Last synced: 05 Dec 2024
https://github.com/pgarrett-scripps/peptidefragmenterstreamlitapp
A peptide fragment ion calculator made with streamlit
fragment fragmentation-calculator mass-spectrometry peptide-identification peptide-modification peptide-sequences peptides protein proteomics streamlit
Last synced: 05 Dec 2024
https://github.com/juliomarcopineda/peptide-serum-stability
Analyze possible peptide fragments with peptide serum stability studies.
cyclic-peptides java mass-spectrometry peptide-fragments peptide-serum-stability peptides stability
Last synced: 11 Nov 2024
https://github.com/biogenies/negativedatasets
Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data.
antimicrobial-peptides benchmarking machine-learning negative-sampling peptides r
Last synced: 19 Nov 2024
