Projects in Awesome Lists tagged with phage
A curated list of projects in awesome lists tagged with phage .
https://github.com/deprekate/phanotate
PHANOTATE: a tool to annotate phage genomes.
annotate-phage-genomes annotation genomics phage
Last synced: 06 Apr 2025
https://github.com/deprekate/PHANOTATE
PHANOTATE: a tool to annotate phage genomes.
annotate-phage-genomes annotation genomics phage
Last synced: 20 Nov 2024
https://github.com/bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-tool biological-data-analysis genomic-data-analysis genomic-regions genomics phage phages prophage
Last synced: 20 Nov 2024
https://github.com/tseemann/phastaf
Identify phage regions in bacterial genomes for masking purposes
bacteria bioinformatics genomics phage
Last synced: 12 Apr 2025
https://github.com/linsalrob/phagehosts
This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048
Last synced: 23 Mar 2025
https://github.com/linsalrob/phageproteomictree
The phage proteomic tree was a breakthrough in evolution, taxonomy, and phylogenetics ... but nobody realized its global importance
awesomeness bioinformatics evolution evolutionary-algorithms phage phylogenetic-trees phylogenetics taxonomy
Last synced: 23 Mar 2025
https://jlmaier12.github.io/TrIdent/
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
bacteriophage horizontal-gene-transfer metagenomics phage transduction transductomics
Last synced: 23 Mar 2025
https://github.com/caleb-collar/motif-sniffer
Report, proposal, and mvp implementation of a simple tool for use in finding motifs in genome data. 🧬
bioinformatics fasta motif phage python
Last synced: 04 Apr 2025
