Projects in Awesome Lists tagged with plasmids
A curated list of projects in awesome lists tagged with plasmids .
https://github.com/bebop/poly
A Go package for engineering organisms.
alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology
Last synced: 05 May 2025
https://github.com/oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
annotation bacteria bacterial-genomes bioinformatics genome-annotation mag metagenome-assembled-genomes microbial-genomics plasmids
Last synced: 14 May 2025
https://github.com/oschwengers/platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
assembly bacteria bioinformatics contigs microbiology ngs plasmids wgs
Last synced: 07 May 2025
https://github.com/smaegol/plasflow
Software for prediction of plasmid sequences in metagenomic assemblies
classification contigs fasta metagenome metagenome-assembly metagenomes plasflow plasmid plasmid-sequences plasmids prediction tensorflow
Last synced: 16 Dec 2024
https://github.com/koeng101/dnadesign
A Go package for designing DNA.
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Last synced: 13 Apr 2025
https://github.com/tiagofilipe12/patlas
Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
database flask mash plasmids visualization vivagraph
Last synced: 23 Apr 2025
https://github.com/oschwengers/tadrep
Targeted Detection and Reconstruction of Plasmids
Last synced: 14 Apr 2025
https://github.com/althonos/moclo
Modular cloning simulation with the MoClo framework in Python
bioinformatics biopython moclo modular-cloning plasmids system-biology
Last synced: 02 Jan 2025
https://github.com/haradama/plasmidpicker
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
bioinformatics classification contigs fasta logistic-regression metagenome metagenomics minhash plasmids
Last synced: 13 Apr 2025
https://github.com/haradama/phash
Software to identify known plasmid sequence from metagenomic assembly using Minhash
bioinformatics biology contigs fasta golang metagenome metagenomics minhash plasmid plasmids
Last synced: 05 Mar 2025
https://github.com/moltinginstar/addgene-api
An unofficial API for Addgene, the open-source plasmid repository.
addgene api dna dna-sequences genbank plasmids rna snapgene synthetic-biology unofficial web-scraping
Last synced: 11 Apr 2025
https://github.com/ssi-dk/bps_fbi_scripts_clostyper
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
cdiff clostridioides-difficile clostyper mge phages plasmids transposons
Last synced: 28 Feb 2025
