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Projects in Awesome Lists tagged with population-genomics

A curated list of projects in awesome lists tagged with population-genomics .

https://github.com/fgvieira/ngsld

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

genotype-likelihoods ld ngs population-genomics

Last synced: 01 Dec 2024

https://github.com/fgvieira/ngsf

Estimation of per-individual inbreeding coefficients under a probabilistic framework

genotype-likelihoods inbreeding ngs population-genomics

Last synced: 01 Dec 2024

https://github.com/alexkychen/assignpop

Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.

cross-validation data-integration gbs machine-learning population-assignment population-genomics r radseq

Last synced: 14 Apr 2025

https://github.com/fgvieira/ngsf-hmm

Estimation of per-individual inbreeding tracts under a probabilistic framework

genotype-likelihoods hmm inbreeding ngs population-genomics

Last synced: 01 Dec 2024

https://github.com/wurmlab/genomicscourse

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

bioinformatics education genome-analysis genome-assembly population-genomics practicals qmul

Last synced: 10 Apr 2025

https://github.com/fgvieira/ngsdist

Estimation of pairwise distances under a probabilistic framework

genetic-distances genotype-likelihoods ngs population-genomics

Last synced: 01 Dec 2024

https://github.com/biomedsciai/geno4sd

An python omics data toolkit for the analysis across biological scales

cancer-genomics dna machine-learning omics omics-data population-genetics population-genomics

Last synced: 03 Dec 2024

https://github.com/nbisweden/workshop-pgip

Population Genomics in Practice main website

population-genomics

Last synced: 05 Mar 2025

https://github.com/nbisweden/workshop-pgip-h23

Population Genomics in Practice main website

population-genomics

Last synced: 05 Mar 2025

https://github.com/bredeson/dioscorea-alata-genomics

Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.

bioinformatics evolution genomics population-genomics qtl-mapping

Last synced: 15 Apr 2025

https://github.com/hernanmd/rehh2-docker

Dockerfile for REHH version 2.0.4

dockerfile population-genomics r

Last synced: 22 Feb 2025

https://github.com/m-osky/population_genetics

Various unix and perl scripts to deal with genetics data: prepare submission files, extract results, and so. Check their "help" to see usage

bash-script genomics perl-script population-genetics population-genomics shell-script

Last synced: 13 Mar 2025

https://github.com/astrabert/drosmel-in-asia

Drosophila melanogaster IndSeq and PoolSeq genomics data in Asia and Europe

academic-project asia data-visualization drosophila-melanogaster genomics-data population-genomics

Last synced: 05 Mar 2025

https://github.com/transgirlcodes/phd_thesis

The LaTeX source for my PhD Thesis, the viva for which took place in September, 2016.

hybridization phd-thesis population-genetics population-genomics recombination thesis

Last synced: 06 Apr 2025

https://github.com/tiagoantao/ld-chart

A Javascript chart for Linkage Disequilibrium (based on three.js)

javascript population-genomics threejs

Last synced: 21 Mar 2025

https://github.com/meeranhussain/population_genomic_analysis

A repository for efficient population genomic analysis using Snakemake workflow.

genome-analysis ngs ngs-analysis population population-genomics rprogramming snakemake-workflow variant-calling whole

Last synced: 25 Feb 2025

https://github.com/karim-mane/mpbr

Population Genomics Analysis for Plasmodium falciparum

malaria population-dynamics population-genetics population-genomics

Last synced: 02 Mar 2025