Projects in Awesome Lists tagged with protein-embedding
A curated list of projects in awesome lists tagged with protein-embedding .
https://github.com/tbepler/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
deep-learning language-model protein-embedding protein-modeling protein-representation-learning protein-sequence protein-structure pytorch recurrent-neural-networks
Last synced: 10 Apr 2025
https://github.com/lirongwu/mape-ppi
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
codebook masked-modeling microenvironment ppi-networks protein-embedding protein-protein-interaction protein-representation-learning vocabulary
Last synced: 07 Apr 2025
https://github.com/tbepler/prose
Multi-task and masked language model-based protein sequence embedding models.
deep-learning language-model protein-embedding protein-sequences representation-learning sequence-embedding
Last synced: 06 Jan 2025