https://github.com/kexinhuang12345/deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

bioinformatics covid19 ddi deep-learning drug-discovery drug-drug-interaction drug-property-prediction drug-repurposing drug-target-interaction drug-target-interactions dti-prediction ppi protein-function-prediction protein-protein-interaction qsar repurposing-drugs side-effects toolkit virtual-screening

Last synced: 02 Jul 2025

https://github.com/kexinhuang12345/DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

bioinformatics covid19 ddi deep-learning drug-discovery drug-drug-interaction drug-property-prediction drug-repurposing drug-target-interaction drug-target-interactions dti-prediction ppi protein-function-prediction protein-protein-interaction qsar repurposing-drugs side-effects toolkit virtual-screening

Last synced: 03 Apr 2025

https://github.com/zjunlp/OntoProtein

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

bert gene-ontology iclr iclr2022 knowledge-graph nlp ontoprotein pretrained-models pretraining protein protein-function-prediction protein-pretraining protein-protein-interaction protein-structure-prediction pytorch

Last synced: 21 Jul 2025

https://github.com/zjunlp/ontoprotein

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

bert gene-ontology iclr iclr2022 knowledge-graph nlp ontoprotein pretrained-models pretraining protein protein-function-prediction protein-pretraining protein-protein-interaction protein-structure-prediction pytorch

Last synced: 13 Jun 2025

https://github.com/J-SNACKKB/FLIP

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

protein protein-design protein-fitness-prediction protein-function-prediction protein-sequences representation-learning

Last synced: 07 Apr 2026

https://github.com/borgwardtlab/deepest

expression-location multimodal-deep-learning protein-function-prediction protein-structure

Last synced: 14 Apr 2025

https://github.com/henriupton99/proteinet-cafa6

Work related to the Kaggle Competition "CAFA 6 Protein Function Prediction"

cafa kaggle kaggle-competition machine-learning protein-function-prediction

Last synced: 07 May 2026

https://github.com/gauravpandeylab/ensemble_integration

Integrating multimodal data through heterogeneous ensembles

dataintegration model-interpretation multimodal protein-function-prediction

Last synced: 15 May 2025

https://github.com/bio-ontology-research-group/nesy-pfp

Verified weighted-model-counting for protein function prediction: predictors memorize; a machine-checked WMC layer generalizes where they fail. Experiments, findings, and Lean 4 proofs.

formal-verification gene-ontology lean4 neurosymbolic protein-function-prediction weighted-model-counting

Last synced: 05 Jun 2026

https://github.com/cepdnaclk/e16-4yp-automated-protein-function-prediction

Automated protein function prediction is critical for the annotation of uncharacterized protein sequences, where accurate prediction methods are still required.we expect to create an accurate prediction model that assigns the best sub-graph of the gene ontology to each new protein and output a prediction score for this sub-graph and/or each predicted term .

afp bioinformatics cafa gene-ontology machine-learning protein-function-prediction

Last synced: 19 Mar 2026