Projects in Awesome Lists tagged with proteomics-data
A curated list of projects in awesome lists tagged with proteomics-data .
https://github.com/lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
bioconductor bioinformatics mass-spectrometry proteomics proteomics-data r visualisation
Last synced: 30 Apr 2025
https://github.com/lgatto/msnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
bioconductor bioinformatics mass-spectrometry proteomics proteomics-data r visualisation
Last synced: 15 May 2025
https://github.com/lgatto/rforproteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
bioconductor bioconductor-packages mass-spectrometry proteomics proteomics-data r tutorial
Last synced: 17 Mar 2025
https://github.com/kevinkovalchik/rawtools
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
csharp-code mass-spectrometry-data orbitrap-ms proteomics-data
Last synced: 09 Apr 2025
https://github.com/kevinkovalchik/RawTools
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
csharp-code mass-spectrometry-data orbitrap-ms proteomics-data
Last synced: 30 Apr 2025
https://github.com/ursgal/ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
mass-spectrometry ms-data mzml omics peptide-identification proteomics proteomics-data python
Last synced: 30 Apr 2025
https://github.com/bigbio/pmultiqc
A library for QC report based on MultiQC framework
mass-spectrometry proteomics proteomics-data qc qc-proteomics
Last synced: 02 Apr 2026
https://github.com/pwilmart/tmt_analysis_examples
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
ipynb jupyter-notebook mass-spectrometry proteomics proteomics-data r tmt tmt-data-analyses
Last synced: 28 Oct 2025
https://github.com/lgatto/proloc
A unifying bioinformatics framework for organelle proteomics
bioconductor proteomics proteomics-data r spatial-proteomics visualisation
Last synced: 06 Apr 2025
https://github.com/pwilmart/irs_normalization
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
ipynb irs-normalization jupyter-notebook mass-spectrometry normalization proteomics proteomics-data r tmt
Last synced: 28 Oct 2025
https://github.com/dev-ev/isobaric-prot-wf-r
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
data-visualization deqms limma proteomics proteomics-data statistical-analysis tmt-data-analysis
Last synced: 13 Aug 2025
https://github.com/br3ndonland/r-proteomics-nrf1
Molecular biology experiments, mass spectrometry-based proteomics, and reproducible data analysis in R
binder jupyter jupyter-notebook mass-spectrometry protein-protein-interaction proteomics proteomics-data r reproducibility reproducibility-crisis reproducible-research rmarkdown rstudio science
Last synced: 05 Apr 2025
https://github.com/a-r-j/tb-resources
List of online databases and resources for Mycobacterium Tuberculosis
computational-biology curated drug-discovery genomics genomics-data genomics-data-sets integration list mycobacterium mycobacterium-tuberculosis omics proteomics proteomics-data proteomics-data-integration proteomics-datasets transcriptomics transcriptomics-data transcriptomics-data-integration transcriptomics-datasets tuberculosis
Last synced: 18 Mar 2026
https://github.com/keniajin/protgear
protGear is a package for protein microarray data processing just before the main analysis.
background-correction microarray-data normalisation proteomics-data r shiny shinydashboard
Last synced: 06 Mar 2025
https://github.com/sivkri/perseus-ms-proteomics-venn
Mass spectrometry Perseus Data analysis
data-analysis mass-spectrometry perseus proteomics proteomics-data proteomics-data-analysis proteomics-data-integration
Last synced: 14 Apr 2026
https://github.com/quantixed/volcanoplot
Making volcano plots from proteomic data in IgorPro
igor-pro proteomics-data statistics volcano
Last synced: 09 Mar 2026
https://github.com/dev-ev/qc-script-pd24
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
lumos mass-spectrometer mass-spectrometry orbitrap-ms proteome-discoverer proteomics proteomics-data qc-scripts sqlite-database
Last synced: 19 Jul 2025