Projects in Awesome Lists tagged with qiime2
A curated list of projects in awesome lists tagged with qiime2 .
https://github.com/biocore/gemelli
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
compositional-data-analysis ctf joint-rpca microbiome qiime2 rclr rpca tempted
Last synced: 04 Apr 2025
https://github.com/biocore/empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis
bioinformatics biplot microbiome ordination phylogeny qiime qiime2 tree-plot visualization
Last synced: 24 Apr 2025
https://github.com/sbslee/dokdo
A Python package for microbiome sequencing analysis with QIIME 2
api cli microbiome-sequencing-analysis qiime2 visualization
Last synced: 21 Mar 2025
https://github.com/cafferychen777/microbiomestat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
16s-rrna amplicon-sequencing dada2 longitudinal-data metagenomes metagenomic-analysis microbiome microbiome-analysis microbiome-data microbiome-workflow omics omics-data-integration phyloseq qiime2 statistics visualization
Last synced: 16 Apr 2025
https://github.com/gibsramen/evident_
Effect size calculations for microbiome data
data-visualization microbiome python qiime2 statistics visualization
Last synced: 13 May 2025
https://github.com/colinbrislawn/q2-forums
Colin's notes for Qiime2 forums questions
open-science qiime2 reproducible-research
Last synced: 20 Mar 2025
https://github.com/meeranhussain/microbiome_analysis
Comparative study of soil microbiome using QIIME2
16s-rrna metagenomic-analysis microbiome qiime2
Last synced: 25 Feb 2025
