Projects in Awesome Lists tagged with read-mapping
A curated list of projects in awesome lists tagged with read-mapping .
https://github.com/muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
bioinformatics bioinformatics-algorithms bioinformatics-tool classification dna-sequences fasta fastq genome genomic-data-analysis long-reads metagenomes metagenomic-analysis metagenomic-classification metagenomic-data metagenomics ncbi-refseq read-mapping refseq short-read-mapper taxonomy
Last synced: 09 Apr 2025
https://github.com/orangeSi/GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
bam bioinformatics comparative-genomics crosslink depth genecluster genome-viewer genomes igv-like indel long-reads read-mapping snp structure-variation sv svg synteny transcriptomics vcf visualization
Last synced: 18 Nov 2025
https://github.com/gaojunxuan/chrom_mini_graph
Space-efficient minimizer-based pangenome reference graph and haplotype mapping tool
bioinformatics genomics graph-algorithms pangenome read-mapping sequence-alignment
Last synced: 10 May 2025
https://github.com/karel-brinda/dymas
Dynamic Mapping Simulator.
bioinformatics ngs read-mapping simulation
Last synced: 08 Mar 2026
https://github.com/jlmaier12/proactive
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
bacteriophage metagenomics mobile-genetic-elements pattern-matching prophages read-mapping sequencing-coverage structural-variants transposable-elements
Last synced: 22 Feb 2026
https://github.com/fulcrumgenomics/rust-yara
Safe Rust FFI bindings for the YARA read mapper and indexer (SeqAn2)
bioinformatics ffi genomics read-mapping rust seqan2 yara
Last synced: 09 Mar 2026
