Projects in Awesome Lists tagged with rna-seq-data
A curated list of projects in awesome lists tagged with rna-seq-data .
https://github.com/nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
alternative-splicing bam-files bioinformatics-pipeline cell-cycle cell-type-classification clustering command-line-tool fastq-anaysis graphical-interface louvain-community-detection marker-gene-analysis network-analysis pagerank pathway-analysis python rna-seq-data scrna-seq-data single-cell-splicing splicing-quantification splicing-visualization
Last synced: 09 Apr 2026
https://github.com/federicomarini/genetonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
bioconductor bioconductor-package data-exploration data-visualization functional-enrichment-analysis gene-expression gui pathway-analysis r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome transcriptomics user-friendly
Last synced: 13 Apr 2025
https://github.com/federicomarini/pcaexplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
bioconductor principal-components r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome user-friendly
Last synced: 13 Apr 2025
https://github.com/goekelab/proactiv
Estimation of Promoter Activity from RNA-Seq data
alternative-promoters genomics promoter-activity promoter-annotation r rna-seq-data
Last synced: 15 Apr 2025
https://github.com/uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
bioinformatics-analysis bioinformatics-pipeline gene-expression gene-expression-omnibus geo geo-data-processing graphical-interface grein interactive-analysis interactive-visualizations processing r rna-seq rna-seq-analysis rna-seq-data rna-seq-pipeline shiny-apps
Last synced: 06 May 2025
https://github.com/immunogenomics/amp_phase1_ra_viewer
🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.
cytof-data data-science data-visualization r rna-seq-data shiny-apps single-cell-rna-seq
Last synced: 27 Jun 2025
https://github.com/sing-group/dewe
DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.
aibench differential-expression java rna-seq rna-seq-data rna-seq-pipeline
Last synced: 03 Jul 2025
https://github.com/mg-rast/mym5nr
M5NRv2 -- non-redundant protein and rRNA database integration
protein-sequences rna-seq-data
Last synced: 27 Dec 2025
https://github.com/adeschen/signatureheatmap
R package to create heatmaps using signature gene list and transcriptomic data
classification gene-list gene-signature heatmap heatmap-visualization r rna-seq-data
Last synced: 18 Mar 2025
https://github.com/sivkri/mirnaseq-de-analysis-qc
Performing RNA-Seq data analysis and quality control using DESeq2 in R.
deseq2 deseq2-analysis differential-expression-analysis quality-control rna-seq rna-seq-analysis rna-seq-data rna-seq-pipeline visualization
Last synced: 22 Mar 2025
https://github.com/fomightez/simulated_data
A repository for code that generates various simulated data.
evolutionary expression gene phylogenetics phylogenomics python r rna-seq-analysis rna-seq-data simulated-data
Last synced: 05 May 2026
