https://github.com/paulflang/sbml2julia

A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.

julia modelling ode optimization ordinary-differential-equations sbml sbml-model systems-biology

Last synced: 15 Apr 2025

https://github.com/paulflang/sbmlinterface.jl

Interface between the Systems Biology Markup Language and Julia

differential-equations julia modelling ode ordinary-differential-equations sbml sbml-model systems-biology

Last synced: 15 Apr 2025

https://github.com/hydraharish123/networkanalyzer

computational-biology cytoscapejs network-biology reactjs sbml-model

Last synced: 06 Apr 2025

https://github.com/matthiaskoenig/iri-model

Hepatocyte model of ischemia reperfusion injury (IRI)

sbml sbml-model

Last synced: 23 Feb 2025