Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with scanpy
A curated list of projects in awesome lists tagged with scanpy .
https://github.com/scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data
Last synced: 01 Oct 2024
https://github.com/scverse/anndata
Annotated data.
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Last synced: 01 Aug 2024
https://github.com/scverse/muon
muon is a multimodal omics Python framework
anndata cite-seq mudata multi-omics multimodal-data multimodal-omics-analysis muon scanpy scatac-seq scrna-seq scverse
Last synced: 01 Aug 2024
https://github.com/theislab/anndata2ri
Convert between AnnData and SingleCellExperiment
bioconductor jupyter rpy2 scanpy single-cell
Last synced: 01 Oct 2024
https://github.com/theislab/ncem
Learning cell communication from spatial graphs of cells
cell-cell-communication cell-cell-interaction cvae encoder-decoder-model glm gnn scanpy squidpy tensorflow
Last synced: 02 Aug 2024