Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with scatac-seq
A curated list of projects in awesome lists tagged with scatac-seq .
https://github.com/scverse/muon
muon is a multimodal omics Python framework
anndata cite-seq mudata multi-omics multimodal-data multimodal-omics-analysis muon scanpy scatac-seq scrna-seq scverse
Last synced: 07 Nov 2024
https://github.com/sanderlab/scperturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
cite-seq database perturbation python r scatac-seq science scrna-seq single-cell statistics
Last synced: 20 Dec 2024
https://github.com/wukevin/babel
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
deep-neural-networks multi-omics scatac-seq scrna-seq single-cell
Last synced: 24 Nov 2024
https://github.com/jumphone/beer
BEER: Batch EffEct Remover for single-cell data
batch-effects scatac-seq scrna-seq single-cell-analysis umap
Last synced: 19 Nov 2024
https://github.com/alleninstitute/aifi-swanson-teaseq
Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
atac-seq icicle-seq scatac-seq tea-seq
Last synced: 09 Dec 2024
https://github.com/SUwonglab/sc-compReg
R package for single-cell comparative regulatory analysis
comparative-regulatory-analysis scatac-seq scrna-seq
Last synced: 16 Nov 2024
https://github.com/jumphone/inferloop
InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop
chromatin-structure scatac-seq single-cell-3d-genome-structure single-cell-chromatin-accessibility single-cell-multi-omics spatial-chromatin-accessibility
Last synced: 19 Nov 2024
https://github.com/mvinyard/cell-tools
Single-Cell Data Analysis Tools
multiomics python pytorch scatac-seq scrna-seq single-cell
Last synced: 01 Oct 2024
