Projects in Awesome Lists tagged with snvs
A curated list of projects in awesome lists tagged with snvs .
https://github.com/Illumina/strelka
Strelka2 germline and somatic small variant caller
bioinformatics indels snps snvs
Last synced: 19 Apr 2025
https://github.com/illumina/strelka
Strelka2 germline and somatic small variant caller
bioinformatics indels snps snvs
Last synced: 05 Apr 2025
https://github.com/sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
annotation-framework annotation-tool cancer cancer-genomics cancer-variants clinical copy-number-variation interpreter oncology-data precision-cancer-medicine precision-oncology reporting-engine snvs somatic therapeutic-targets tumor variant-interpretation vcf
Last synced: 27 Feb 2026
https://github.com/nygenome/lancet
Microassembly based somatic variant caller for NGS data
cancer-genomics debruijn-graph indels local-assembly snvs somatic-mutations variant-callers
Last synced: 14 Mar 2025
https://github.com/hku-bal/clairs-to
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics deep-learning genomics illumina long-read-sequencing long-reads nanopore ont pacbio snvs somatic-mutations somatic-variants tumor-only tumors variant-calling variants
Last synced: 05 May 2026
https://github.com/nalomran/pyreqtl
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
bioinformatics bioinformatics-analysis bioinformatics-tool data-science gene-expression matrixeqtl numpy pandas python python3 r rna-seq rna-seq-analysis rpy2 scipy snvs
Last synced: 27 Oct 2025
https://github.com/edawson/assisi
A somatic mutation signature simulator
autoencoders mutational-signatures simulation snvs
Last synced: 19 Nov 2025
