Projects in Awesome Lists tagged with somatic
A curated list of projects in awesome lists tagged with somatic .
https://github.com/nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
annotation bioinformatics cancer conda containers gatk4 genomics germline next-generation-sequencing nextflow nf-core pipeline pre-processing reproducible-research somatic target-panels variant-calling whole-exome-sequencing whole-genome-sequencing workflow
Last synced: 12 Feb 2026
https://github.com/sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
annotation-framework annotation-tool cancer cancer-genomics cancer-variants clinical copy-number-variation interpreter oncology-data precision-cancer-medicine precision-oncology reporting-engine snvs somatic therapeutic-targets tumor variant-interpretation vcf
Last synced: 27 Feb 2026
https://github.com/opengene/mutscan
Detect and visualize target mutations by scanning FastQ files directly
bioinformatics cancer detection fastq mutation ngs somatic validation variant visualization
Last synced: 10 Apr 2025
https://github.com/OpenGene/MutScan
Detect and visualize target mutations by scanning FastQ files directly
bioinformatics cancer detection fastq mutation ngs somatic validation variant visualization
Last synced: 09 May 2025
https://github.com/opengene/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
bioinformatics consensus deduplication deep-sequencing duplex duplex-sequencing duplication ngs sequencing sequencing-error sequencing-noise somatic
Last synced: 20 Aug 2025
https://github.com/OpenGene/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
bioinformatics consensus deduplication deep-sequencing duplex duplex-sequencing duplication ngs sequencing sequencing-error sequencing-noise somatic
Last synced: 09 May 2025