Projects in Awesome Lists tagged with somatic-mutations
A curated list of projects in awesome lists tagged with somatic-mutations .
https://github.com/nygenome/lancet
Microassembly based somatic variant caller for NGS data
cancer-genomics debruijn-graph indels local-assembly snvs somatic-mutations variant-callers
Last synced: 14 Mar 2025
https://github.com/crazyhottommy/dna-seq-analysis
DNA sequencing analysis notes from Ming Tang
cancer-genomes genome-sequencing somatic-mutations
Last synced: 19 Dec 2024
https://github.com/shixiangwang/sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
bayesian-nmf bioinformatics cancer-research cnv copynumber-signatures cosmic-signatures dbs easy-to-use indel mutational-signatures nmf nmf-extraction r sbs signature-extraction somatic-mutations somatic-variants visualization
Last synced: 06 Apr 2025
https://github.com/ShixiangWang/sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
bayesian-nmf bioinformatics cancer-research cnv copynumber-signatures cosmic-signatures dbs easy-to-use indel mutational-signatures nmf nmf-extraction r sbs signature-extraction somatic-mutations somatic-variants visualization
Last synced: 04 Dec 2024
https://github.com/single-cell-genetics/cardelino
Clone identification from single-cell data
clonal-clustering gibbs-sampling scrna-seq single-cell somatic-mutations
Last synced: 13 Apr 2025
https://github.com/clinical-genomics/balsamic
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
bioinformatics genomics snakemake-workflows somatic-mutations variant-calling
Last synced: 16 Dec 2024
https://github.com/poisonalien/somaticfreq
knowledge-based genotyping of cancer hotspots from the tumor BAM files
bam-files cancer-genomics html-report somatic-mutations
Last synced: 12 May 2025
https://github.com/tobiasrausch/nrex
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
alignment germline mutations sequencing somatic-mutations somatic-variants structural-variation variant-calling
Last synced: 13 Apr 2025
https://github.com/likelet/camutqc
An R package for mutation quality control of cancer genomic sequening dataset
cancer-genomics somatic-mutations
Last synced: 24 Apr 2025
https://github.com/uscbiostats/hilda
:package: An R package for inferring the mutational exposures difference between groups.
mutational-signatures r-package rjags somatic-mutations
Last synced: 28 Apr 2025
https://github.com/cbrueffer/mutationexplorer
R Shiny based lightweight mutation exploration tool
bioinformatics cancer cancer-genomics mutations r rna-seq scanb shiny shinyapp somatic-mutations
Last synced: 05 Apr 2025
https://github.com/karchinlab/hotmaps_2016
Detects hotspot regions for somatic mutations in 3D protein structures
cancer exome-scale hotspot hotspot-regions missense-mutations protein-structure somatic-mutations
Last synced: 16 Mar 2025
