Projects in Awesome Lists tagged with spatial-omics
A curated list of projects in awesome lists tagged with spatial-omics .
https://github.com/scverse/napari-spatialdata
Interactive visualization of spatial omics data
napari napari-plugin spatial-analysis spatial-omics visualization
Last synced: 07 Jul 2025
https://github.com/Mr-Milk/SpatialTis
Spatial analysis toolkit for single cell multiplexed tissue data
cell-cell-interaction heterogeneity hotspot imaging-mass-cytometry multiplexed-ion-beam-imaging network single-cell spaital-analysis spatial-analysis spatial-distribution spatial-omics tissue
Last synced: 02 Feb 2026
https://github.com/jefworks-lab/seraster
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
rstats spatial-analysis spatial-data-analysis spatial-omics spatial-transcriptomics
Last synced: 18 Feb 2026
https://github.com/m4i-imaging-mass-spectrometry/thyra
A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
bioinformatics bruker data-conversion ecuypers-group imzml m4i-cuypers-group mass-spectrometry mass-spectrometry-imaging msi omics-data-integration scientific-computing spatial-omics spatialdata zarr
Last synced: 25 Feb 2026
https://github.com/boyiguo1/escher
R package to visualize colocalization for single cell & spatially-resolved genomics data
multidimensional rstats single-cell spatial-omics visualization
Last synced: 11 Oct 2025
https://github.com/hutaobo/cell-gps
Cell-GPS is the Python package and reference implementation for Cophenetic Spatial Topology Embedding (COSTE), a spatial topology analysis framework for spatial omics data.
bioinformatics data-visualization python scanpy single-cell spatial-analysis spatial-omics spatial-transcriptomics visium xenium
Last synced: 07 Jun 2026
