Projects in Awesome Lists tagged with splicing

https://github.com/lucidrains/alphagenome

Implementation of AlphaGenome, Deepmind's updated genomic attention model

artificial-intelligence attention-mechanisms deep-learning genomics splicing transformers

Last synced: 04 Feb 2026

https://github.com/kuanhao-chao/splam

✂️ Deep learning-based splice site predictor that improves spliced alignments

alignment annotation convolutional-neural-networks deep-learning residual-networks rna-seq splice-junctions spliced-alignment splicing transcript-assembly

Last synced: 01 Mar 2026

https://github.com/dputhier/pygtftk

A python package and a set of shell commands to handle GTF files

bed bigwig bioinformatics cds chip-seq dna-sequences exon gene genomic genomics gtf intron ngs rna-seq splicing transcript tss tts

Last synced: 14 Jan 2026

https://github.com/gagneurlab/fraser

FRASER - Find RAre Splicing Events in RNA-seq

aberrant-splicing diagnostics outlier-detection r rare-disease rna-seq splicing

Last synced: 09 Oct 2025

https://github.com/gagneurlab/mmsplice_mtsplice

Tissue-specific variant effect predictions on splicing

machine-learning splicing variant-effect-prediction vep-plugin

Last synced: 14 Dec 2025

https://github.com/dzhang32/dasper

Detecting Aberrant Splicing Events from RNA-sequencing data

diagnostics rare-disease rna-seq-analysis splicing

Last synced: 21 Feb 2026

https://github.com/dohlee/spliceai-pytorch

Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

artificial-intelligence bioinformatics biology computational-biology deep-learning deep-neural-networks reproduction reproduction-code splicing variant-effect-prediction

Last synced: 05 Jul 2025

https://github.com/yuhuihui2011/vasp

Quantification and Visualization of Variations of Splicing in Population

3s-scores alternative-splicing ballgown rna-seq splicing sqtl statistics visualization

Last synced: 19 Feb 2026

https://github.com/remittor/wcpatcher

WCP - archives browsing accelerator for Total Commander

accelerator patch plugin splicing totalcmd

Last synced: 20 May 2026

https://github.com/sanjanabhatnagar/inferring-exon-and-intron-metadata-from-.gff-file

This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.

exon-annotation exon-intron-structure gff gff-toolkit intron-annotation intron-classification intron-coordinates introns splicing splicing-analyses