Projects in Awesome Lists tagged with squidpy
A curated list of projects in awesome lists tagged with squidpy .
https://github.com/scverse/squidpy
Spatial Single Cell Analysis in Python
data-visualization image-analysis single-cell-genomics single-cell-rna-seq spatial-analysis spatial-transcriptomics squidpy
Last synced: 07 Jul 2025
https://github.com/theislab/ncem
Learning cell communication from spatial graphs of cells
cell-cell-communication cell-cell-interaction cvae encoder-decoder-model glm gnn scanpy squidpy tensorflow
Last synced: 11 Oct 2025
https://github.com/cafferychen777/chatspatial
🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.
agentic-ai bioinformatics cell-communication claude-desktop computational-biology deconvolution genomics llm-agent machine-learning mcp-server model-context-protocol python pytorch scanpy single-cell spatial-analysis spatial-domains spatial-transcriptomics squidpy visualization
Last synced: 02 May 2026
