Projects in Awesome Lists tagged with sratoolkit
A curated list of projects in awesome lists tagged with sratoolkit .
https://github.com/saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
bioinformatics bioinformatics-pipeline ena ncbi-sra ncbi-sra-archive sra sratoolkit
Last synced: 14 May 2025
https://github.com/yodeng/srautils
fast utils for fetch and dump NCBI SRA archive raw data
fastq-dump ncbi-sra sra-data sra-toolkit sratoolkit
Last synced: 18 Jan 2026
https://github.com/ibchgenomic/sra-explorer
explore sra databases and sequence retrieval
bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit
Last synced: 18 Mar 2025
https://github.com/applicativesystem/sra-explorer
explore sra databases and sequence retrieval
bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit
Last synced: 15 Aug 2025
https://github.com/leooojr/reprohackathon
A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
apptainer bash bowtie cli cutadapt deseq2 fastqc featurecounts google-cloud-platform hpc nextflow ngs-analysis ngs-pipeline r samtools shell sratoolkit ubuntu
Last synced: 07 May 2026
