Projects in Awesome Lists tagged with structural-variations
A curated list of projects in awesome lists tagged with structural-variations .
https://github.com/fritzsedlazeck/sniffles
Structural variation caller using third generation sequencing
bioconda bioinformatics nanopore ngm-lr pacbio structural-variation structural-variations
Last synced: 14 May 2025
https://github.com/Illumina/manta
Structural variant and indel caller for mapped sequencing data
bioinformatics indels structural-variation structural-variations
Last synced: 19 Apr 2025
https://github.com/fritzsedlazeck/survivor
Toolset for SV simulation, comparison and filtering
bioconda bioinformatics comparison simulator structural-variations survivor vcf
Last synced: 05 Apr 2025
https://github.com/philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
alignment bioconda docker long-read mapper next-generation-sequencing oxford-nanopore pacbio structural-variations
Last synced: 14 Apr 2025
https://github.com/walaj/svaba
Structural variation and indel detection by local assembly
assembled-contigs c-plus-plus indels structural-variations variants
Last synced: 21 Jan 2026
https://github.com/fritzsedlazeck/survivor_ant
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
annotation structural-variations svs vcf
Last synced: 17 Feb 2026
https://github.com/coopsor/svpg
Pangenome-based structural variation caller
bioinformatics hifi nanopore pangenome rare-variant somatic-variant structural-variations
Last synced: 20 Jan 2026
https://github.com/vborjesson/SVenX
Pipeline for SV detection using 10X genomics data
10x-genomics pipeline structural-variations
Last synced: 14 Mar 2025
