Projects in Awesome Lists tagged with suffixarray
A curated list of projects in awesome lists tagged with suffixarray .
https://github.com/williamfiset/deprecated-data-structures
A collection of powerful data structures
balanced-tree binarytree data-structures disjoint-set fenwick graph hash-table heap java linkedlist priority-queue queue segment-tree segmenttree stack suffixarray suffixtree trie union-find unionfind
Last synced: 15 May 2025
https://github.com/seqan/seqan
SeqAn's official repository.
alignment bioinfomatics blast bwt cpp14 fasta fastq-format high-performance htslib indexing sam-bam seqan sequence-alignments simd suffixarray
Last synced: 15 May 2025
https://github.com/ilyagrebnov/libsais
The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (LCP) array, permuted LCP (PLCP) array, Burrows-Wheeler transform (BWT) and inverse BWT based on the induced sorting algorithm with optional OpenMP support for multi-core parallel construction.
burrows-wheeler-transform bwt divsufsort generalized-suffix-array lcp lcp-array longest-common-prefix parallel-suffix-array saca sais suffix-array suffixarray
Last synced: 21 Oct 2025
https://github.com/emmanuel-marty/lz4ultra
Optimal LZ4 compressor, that produces files that decompress faster while keeping the best compression ratio
c compression lz4 optimization suffixarray
Last synced: 06 May 2025
https://github.com/zamgi/suffixarray
Implementation of suffix array
bplus-tree btree search-algorithm substrings suffix-array suffixarray
Last synced: 06 Apr 2025
https://github.com/aminul-islam-niloy/suffix-array
suffix Array implementation using c++
suffix suffix-array suffixarray
Last synced: 02 Mar 2025
https://github.com/sciencegenome/suffix-arrays
rust suffix arrays
algorithms-and-data-structures bioinformatics bioinformatics-algorithms genome-analysis genome-sequencing suffix-array suffix-tree suffixarray
Last synced: 29 Jul 2025
https://github.com/ibchgenomic/suffix-arrays
rust suffix arrays
algorithms-and-data-structures bioinformatics bioinformatics-algorithms genome-analysis genome-sequencing suffix-array suffix-tree suffixarray
Last synced: 30 Mar 2025
