Projects in Awesome Lists tagged with supplement
A curated list of projects in awesome lists tagged with supplement .
https://github.com/greenelab/sprint_gan
Privacy-preserving generative deep neural networks support clinical data sharing
data-sharing differential-privacy gan generative-adversarial-network neural-network supplement
Last synced: 16 Jul 2025
https://github.com/greenelab/continuous_analysis
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
continuous-integration methodology open-science reproducibility supplement
Last synced: 05 May 2025
https://github.com/greenelab/adage
Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016
autoencoders data dataset denoising-autoencoders gene-expression machine-learning manuscript methodology neural-networks paper pseudomonas-aeruginosa research supplement
Last synced: 07 Mar 2026
https://github.com/greenelab/rnaseq_titration_results
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
analysis bioinformatics cancer gene-expression machine-learning microarray normalization rnaseq supplement
Last synced: 07 Mar 2026
https://github.com/greenelab/tdmresults
Scripts and data for re-creating TDM results.
dataset gene-expression results supplement
Last synced: 05 May 2025
https://github.com/greenelab/czi-latent-assessment
Supplement to the report in https://greenelab.github.io/czi-hca-report/
Last synced: 05 May 2025
https://github.com/greenelab/scihub-browser-data
Data for the Sci-Hub Stats Browser
data journals piracy sci-hub supplement webapp
Last synced: 09 Oct 2025
https://github.com/greenelab/pathcore-t-analysis
This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.
feature-extraction gene-expression pathway-analysis supplement
Last synced: 05 May 2025
https://github.com/greenelab/simulate-expression-compendia
Evaluating the effect of technical sources of variability in large-scale gene expression compendia.
analysis dataset methodology software supplement tool
Last synced: 05 May 2025
https://github.com/greenelab/model-free-data
Case-control genetics datasets evolved to be epistatic
biodata-mining dataset epistasis genetics moore-lab notebook open-data simulation snps supplement
Last synced: 18 Feb 2026
https://github.com/greenelab/pathcore-t
Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.
analysis gene-expression methodology supplement
Last synced: 05 May 2025
https://github.com/greenelab/adni-netwas
Repository associated with Song et al. manuscript describing a Network-wide Association Study of ADNI Cohorts.
analysis networks plot supplement
Last synced: 05 May 2025
https://github.com/code-jl/supplement-tracker
A Python application to track your supplements, their quantities, and calculate cost effectiveness.
cost-calculation dark-mode dark-theme file-associations inventory-management management-system pyinstaller supplement supplements tkinter ttk
Last synced: 01 Aug 2025
https://github.com/greenelab/signatureanalysis-casestudy
This repository stores scripts and results for the case study in the ADAGE signature analysis paper.
Last synced: 03 Mar 2026