Projects in Awesome Lists tagged with synbio

https://github.com/bebop/poly

A Go package for engineering organisms.

alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology

Last synced: 11 Mar 2026

https://github.com/edinburgh-genome-foundry/dnachisel

:pencil2: A versatile DNA sequence optimizer

bioinformatics codon-optimization dna-optimization sequence-design synbio synthetic-biology

Last synced: 14 May 2025

https://github.com/edinburgh-genome-foundry/python_codon_tables

:bar_chart: Codon usage tables in code-friendly format + Python bindings

bioinformatics codon-optimization codon-usage synbio

Last synced: 12 Dec 2025

https://github.com/Edinburgh-Genome-Foundry/python_codon_tables

:bar_chart: Codon usage tables in code-friendly format + Python bindings

bioinformatics codon-optimization codon-usage synbio

Last synced: 09 Jan 2026

https://github.com/koeng101/dnadesign

A Go package for designing DNA.

bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology

Last synced: 13 Apr 2025

https://github.com/edinburgh-genome-foundry/genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

bioinformatics blast bowtie ncbi python synbio synthetic-biology taxid

Last synced: 15 Jul 2025

https://github.com/edinburgh-genome-foundry/genedom

Batch domestication of genetic parts with Python

dna-assembly part-domestication sequence-design synbio synthetic-biology

Last synced: 23 Jul 2025

https://github.com/brsynth/retropath2-wrapper

Python wrapper for Retropath2.0 Knime workflow

metabolic-engineering synbio synthetic-biology

Last synced: 11 Apr 2026

https://github.com/jacobgrisham/synthetic-biology-lims

(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS through Google Domains.

circleci django django-rest-framework docker docker-compose full-stack-web-development kubernetes lims microservices-architecture postgresql python react redis redux rest-api restful-api styled-components synbio synthetic-biology typescript

Last synced: 11 Aug 2025

https://github.com/JacobGrisham/Synthetic-Biology-LIMS

(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS through Google Domains.

circleci django django-rest-framework docker docker-compose full-stack-web-development kubernetes lims microservices-architecture postgresql python react redis redux rest-api restful-api styled-components synbio synthetic-biology typescript