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An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with taxonomy
A curated list of projects in awesome lists tagged with taxonomy .
https://github.com/soedinglab/mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
alignment bioinformatics blast linclust metagenomics mmseqs profile-search sequence-clustering sequence-search taxonomy
Last synced: 30 Sep 2024
https://github.com/electric-capital/crypto-ecosystems
A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems
blockchain crypto-ecosystems cryptocurrency decentralization taxonomy
Last synced: 30 Sep 2024
https://github.com/soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
alignment bioinformatics blast linclust metagenomics mmseqs profile-search sequence-clustering sequence-search taxonomy
Last synced: 02 Aug 2024
https://github.com/bugcrowd/vulnerability-rating-taxonomy
Bugcrowd’s baseline priority ratings for common security vulnerabilities
bugcrowd rating taxonomy vrt vulnerabilities
Last synced: 04 Aug 2024
https://github.com/shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
bioinformatics cross-platform lca lineage taxdump taxid taxonkit taxonomy
Last synced: 02 Aug 2024
https://github.com/ropensci/taxize
A taxonomic toolbelt for R
api api-wrapper biodiversity biology darwincore data nomenclature r r-package rstats taxize taxonomy
Last synced: 03 Aug 2024
https://github.com/wponion/wponion
~ Lightweight, Flexible & Rapid WP Development Framework ~
metabox metaboxes settings-api taxonomy user-profile wordpress wordpress-options-builder wordpress-options-framework wordpress-options-plugin wordpress-plugin wordpress-plugin-settings wordpress-theme wordpress-theme-settings wp wp-options wp-plugin wp-plugin-settings wp-theme wp-theme-settings wponion
Last synced: 03 Aug 2024
https://github.com/Nhogs/popoto-examples
Contains a list of Popoto.js examples
css-customization cypher cypher-viewer graph markers northwind query-viewer region schema taxonomy
Last synced: 01 Aug 2024
https://github.com/grunwaldlab/metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
community-diversity cran hierarchical metabarcoding pcr r taxonomy trees
Last synced: 13 Aug 2024
https://github.com/Imageomics/bioclip
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
clip computer-vision imageomics knowledge-guided-machine-learning taxonomy
Last synced: 01 Aug 2024
https://github.com/shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
bioinformatics golang minimizer package scaled-minhash sequence syncmer taxdump taxonomy
Last synced: 02 Aug 2024
https://github.com/SpeciesFileGroup/taxonworks
Workbench for biodiversity informatics.
biodiversity biodiversity-informatics collections describe evolution life nomenclature ruby species taxonomy
Last synced: 03 Aug 2024
https://github.com/pr2database/pr2database
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
18s-rrna database eukaryotes metabarcoding rrna taxonomy
Last synced: 13 Aug 2024
https://github.com/sparna-git/skos-play
SKOS-Play allows to print SKOS files in HTML or PDF. It also embeds xls2rdf to generate RDF from Excel.
d3js rdf semantic-web skos skos-play skos-xl sparql taxonomy thesaurus
Last synced: 01 Aug 2024
https://github.com/morningmoni/TaxoRL
Code for paper "End-to-End Reinforcement Learning for Automatic Taxonomy Induction", ACL 2018
dynet reinforcement-learning taxonomy taxonomy-construction taxonomy-induction wordnet
Last synced: 04 Aug 2024
https://github.com/ropensci/taxa
taxonomic classes for R
data-cleaning r r-package rstats taxon taxonomy
Last synced: 13 Aug 2024
https://github.com/wikibonsai/wikibonsai
A jungle gym for thought with an API for the mind.
bidirectional-link digital-garden exocortex graph hierarchy knowledge-base knowledge-bonsai markdown note-taking ontology personal-knowledge-management personal-wiki pkm second-brain semantic-tree taxonomy wikibonsai wikilink wikiref zettelkasten
Last synced: 07 Aug 2024
https://github.com/ropensci/rotl
Interface to Open Tree of Life API
peer-reviewed phylogeny r r-package rstats taxonomy
Last synced: 03 Aug 2024
https://github.com/pyinat/naturtag
Tag your nature photos with iNat taxonomy and observation metadata
biodiversity biodiversity-data cli darwin-core dwc exif hierarchical-keywords inaturalist iptc photography taxonomy xmp
Last synced: 03 Aug 2024
https://github.com/sckott/pytaxize
python port of taxize (taxonomy toolbelt) for R
Last synced: 02 Oct 2024
https://github.com/milangritta/Pragmatic-Guide-to-Geoparsing-Evaluation
Full resources supporting the publication "A Pragmatic Guide to Geoparsing Evaluation."
analysis data evaluation geocoder geocoding geography geoparser geoparsing google-cloud linguistics location machine-learning named-entity-recognition places spacy-nlp taxonomy toponym-resolution toponyms toponymy training-data
Last synced: 01 Aug 2024
https://github.com/derwenai/mkrefs
MkDocs plugin to generate semantic reference Markdown pages from a knowledge graph
apidocs bibliography generence glossary jinja2-template knowledge-graph mkdocs mkdocs-plugin mkdocs-plugins rdf taxonomy
Last synced: 25 Sep 2024
https://github.com/ropensci/taxizedb
Tools for Working with Taxonomic SQL Databases
itis r r-package rstats taxize taxonomic-databases taxonomy
Last synced: 13 Aug 2024
https://github.com/uhh-lt/Taxonomy_Refinement_Embeddings
Taxonomy refinement method to improve domain-specific taxonomy systems.
acl2019 embeddings hyperbolic-embeddings hyperbolic-geometry poincare-embeddings semeval taxonomy taxonomy-induction word-embeddings word2vec wordnet
Last synced: 04 Aug 2024
https://github.com/ropensci/worrms
World Register of Marine Species R client
api-wrapper biological-data biology fish jerico-relevant marine-biology marine-species r r-package rstats taxize taxonomy
Last synced: 03 Aug 2024
https://github.com/tushartushar/smells
A Taxonomy of Software Smells
catalog code-quality code-smells maintainability software-smells taxonomy
Last synced: 04 Aug 2024
https://github.com/collective/collective.taxonomy
Create, edit and use hierarchical taxonomies in Plone!
hacktoberfest plone plone-addon python taxonomy
Last synced: 01 Aug 2024
https://github.com/yueyu1030/STEAM
[KDD 2020] This is the code repository for our KDD'20 paper STEAM: Self-Supervised Taxonomy Expansion with Mini-Paths.
gnn-propagated-embeddings hypernymy-detection kdd knowledge-extraction multi-view-learning self-supervised-learning taxonomy taxonomy-expansion
Last synced: 04 Aug 2024
https://github.com/shenwei356/gtaxon
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.
bioinformatics client golang lca restful server taxonomy
Last synced: 02 Aug 2024
https://github.com/rseng/software
research software encyclopedia database
criteria hacktoberfest research-software rseng software taxonomy
Last synced: 02 Aug 2024
https://github.com/ropensci/rgnparser
Parse scientific names using gnparser (https://github.com/gnames/gnparser)
Last synced: 30 Sep 2024
https://github.com/rseng/rseng
research software engineering taxonomy and criteria
Last synced: 07 Aug 2024
https://github.com/Kriebel-LLC/taxonomy-edge
taxonomy starter app at the edge
cloudflare cloudflare-pages drizzle edge firebase-auth next-firebase-auth-edge nextjs planetscale shadcn-taxonomy shadcn-ui tailwindcss taxonomy typescript
Last synced: 26 Sep 2024
https://github.com/nkostadinov/yii2-taxonomy
Yii2 taxonomy extension
php taxonomy yii2 yii2-extension yii2-taxonomy
Last synced: 27 Sep 2024
https://github.com/audy/ncbi-taxonomy-bot
Bot that toots when NCBI updates their taxonomy database
bioinformatics bots ncbi taxonomy
Last synced: 02 Oct 2024
https://github.com/jingcshi/ICON
Implicit Taxonomy Completion
ontology ontology-engineering taxonomy taxonomy-induction
Last synced: 04 Aug 2024
https://github.com/r7-labs/R7.News
Taxonomy-driven news subsystem for DNN Platform
aspnet dnn dotnetnuke module news taxonomy
Last synced: 03 Aug 2024
https://github.com/lloc/multisite-taxonomy-widget
List the latest posts of a specific taxonomy in the whole blog-network
custom-taxonomy multisite shortcode taxonomy widgets wordpress wordpress-plugin
Last synced: 01 Oct 2024
https://github.com/horttcore/term-thumbnails
Post Thumbnails for WordPress Terms
post-thumbnails taxonomy term-thumbnails wordpress wordpress-terms
Last synced: 26 Sep 2024
https://github.com/nelson-ph/d8-termstatus
cms d8 drupal-8 drupal-module drupal8 drupal8-module management php publishing taxonomy
Last synced: 27 Sep 2024
https://github.com/amethyst-php/taxonomy
amethyst amethyst-package api data laravel taxonomy
Last synced: 25 Sep 2024
