Projects in Awesome Lists tagged with tcga-data
A curated list of projects in awesome lists tagged with tcga-data .
https://github.com/mahmoodlab/clam
Open source tools for computational pathology - Nature BME
bioimage-informatics camelyon16 camelyon17 clam computational-pathology data-efficient deep-learning digital-pathology histopathology mahmoodlab pathology quantitative-pathology tcga-data weakly-supervised-learning whole-slide-imaging
Last synced: 14 May 2025
https://github.com/mahmoodlab/CLAM
Open source tools for computational pathology - Nature BME
bioimage-informatics camelyon16 camelyon17 clam computational-pathology data-efficient deep-learning digital-pathology histopathology mahmoodlab pathology quantitative-pathology tcga-data weakly-supervised-learning whole-slide-imaging
Last synced: 06 May 2025
https://github.com/bioinformaticsfmrp/tcgabiolinks
TCGAbiolinks
bioc bioconductor gdc integrative-analysis r tcga tcga-data tcgabiolinks
Last synced: 14 May 2025
https://bioinformaticsfmrp.github.io/TCGAbiolinks
TCGAbiolinks
bioc bioconductor gdc integrative-analysis r tcga tcga-data tcgabiolinks
Last synced: 18 Feb 2025
https://github.com/MarvinLer/tcga_segmentation
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
computational-pathology data-efficient histopathology image-segmentation medical-imaging miccai multiple-instance-learning pathology segmentation slide-image-segmentation tcga tcga-data tumor-segmentation weakly-supervised-learning whole-slide-imaging wsi
Last synced: 06 May 2025
https://github.com/poisonalien/tcgamutations
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
ccle maf maftools mutations somatic-variants tcga-data
Last synced: 06 Apr 2025
https://github.com/bioinformaticsfmrp/tcgabiolinksgui
TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
bioconductor gdc gui integrative r tcga-data tcgabiolinks
Last synced: 07 May 2025
https://github.com/mahmoodlab/CPATH_demographics
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
ai-bias-testing ai-fairness ai-health ai4health ai4health-bias algorithimic-fairness bias-fairness-metrics computational-pathology demographic-bias digital-pathology ebrains fairness health-disparities pathology-bias pathology-disparities quantitative-pathology tcga-data
Last synced: 06 May 2025
https://github.com/mahmoodlab/cpath_demographics
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
ai-bias-testing ai-fairness ai-health ai4health ai4health-bias algorithimic-fairness bias-fairness-metrics computational-pathology demographic-bias digital-pathology ebrains fairness health-disparities pathology-bias pathology-disparities quantitative-pathology tcga-data
Last synced: 28 Apr 2025
https://github.com/mahshaaban/mircancerdb
A database for microRNA-gene/protein expression correlation in cancer.
cancer-genomics database microrna r sqlite tcga-data
Last synced: 28 Apr 2025
https://github.com/mschubert/tcgabiolinks-downloader
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
cancer reproducible-research rstats tcga-data
Last synced: 14 Apr 2025
https://github.com/asmagen/spagefinder
Computational approach to identify Survival associated Pairwise Gene Expression states.
genetic genetic-interactions interaction survival-analysis tcga-data
Last synced: 23 Mar 2025
https://github.com/eurus-holmes/tumor2graph
Tumor2Graph: a novel Overall-Tumor-Profile-derived virtual graph deep learning for predicting tumor typing and subtyping.
cluster cnn gcn gnn graph-deep-learning multimodal-data multimodal-graphs tcga-data
Last synced: 02 May 2025
https://github.com/bcgsc/tasrkleat-tcga-analysis-scripts
This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
alternative-polyadenylation cleavage-sites rna-seq tcga tcga-data
Last synced: 03 Jan 2025
https://github.com/averissimo/tcga.data
Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
data-package r research tcga tcga-data
Last synced: 03 Apr 2025
https://github.com/mahshaaban/cregulomedb
Build the database file for cRegulome package
cancer-genomics databases datascience microrna r tcga-data transcription-factors
Last synced: 26 Feb 2025