Projects in Awesome Lists tagged with tractography

https://github.com/slicer/slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 28 Sep 2024

https://github.com/Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 01 Aug 2024

https://github.com/Slicer/SlicerGitSVNArchive

:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

3d-printing 3d-slicer c-plus-plus cross-platform image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Last synced: 04 Aug 2024

https://github.com/dipy/dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

bundles contextual-enhancement denoising diffusion-mri dki dti machine-learning medical-imaging microstructure neuroanatomy neuroimaging patch2self python registration segmentation self-supervised-learning spherical-harmonics tracking tractography tractometry

Last synced: 03 Aug 2024

https://github.com/cwatson/brainGraph

Graph theory analysis of brain MRI data

brain-connectivity brain-imaging complex-networks connectome connectomics fmri graph-theory mri network-analysis neuroimaging neuroscience r statistics tractography

Last synced: 31 Jul 2024

https://github.com/PennLINC/qsiprep

Preprocessing and reconstruction of diffusion MRI

connectomics diffusion-mri pipelines python tractography

Last synced: 02 Aug 2024

https://github.com/dPys/PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

brain-connectivity decision-trees dipy dmri ensemble-learning ensemble-sampling fmri fuzzy-logic graph-neural-networks gridsearch multiverse networks networkx nilearn nipype optimization tractography workflow

Last synced: 02 Aug 2024

https://github.com/raamana/neuropredict

Easy and comprehensive assessment of predictive power, with support for neuroimaging features

anatomical-mri cross-validation easy-to-use functional-connectivity machine-learning neuroimaging nilearn pattern-recognition report resting-state scikit-learn structural-imaging tract-based-statistics tractography

Last synced: 02 Aug 2024

https://mfroeling.github.io/QMRITools/

Processing and visualization tools for quantitative MRI data

denoising diffusion dixon dti elastix epg extended-phase-graphs fasculation ivim jcoupling mathematica muscle nifti nii noise-suppression registration relaxometry spectroscopy tractography visualization

Last synced: 04 Aug 2024

https://github.com/brain-life/encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

brain brain-connectomes diffusion-mri encoding-connectomes life matlab mba multidimensional-arrays tractography white-matter-connectomes

Last synced: 02 Aug 2024

https://github.com/cwatson/mri_library

Scripts for MRI preprocessing

brain diffusion-mri dti dwi hpc-applications mri neuroimaging pipeline slurm tractography

Last synced: 02 Aug 2024

https://github.com/matteomancini/trampolino

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

brainweb tractography

Last synced: 02 Aug 2024