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Projects in Awesome Lists tagged with transcriptome

A curated list of projects in awesome lists tagged with transcriptome .

https://github.com/COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome

Last synced: 03 Aug 2024

https://github.com/bcgsc/NanoSim

Nanopore sequence read simulator

genome nanopore-sequencing oxford-nanopore simulator transcriptome

Last synced: 02 Aug 2024

https://github.com/mortazavilab/TALON

Technology agnostic long read analysis pipeline for transcriptomes

oxford-nanopore pacbio transcript-quantification transcriptome

Last synced: 02 Aug 2024

https://github.com/greenelab/pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

analysis cancer classifier gene-expression machine-learning methodology pancancer tcga tool transcriptome

Last synced: 03 Aug 2024

https://github.com/jminnier/STARTapp

The START App: R Shiny Transcriptome Analysis Resource Tool

bioinformatics genome-biology r rna-seq shiny shiny-apps transcriptome visualization

Last synced: 02 Aug 2024

https://github.com/comprna/RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

bioinformatics clustering genomics nanopore rna-seq transcriptome

Last synced: 02 Aug 2024