Projects in Awesome Lists tagged with transcriptome
A curated list of projects in awesome lists tagged with transcriptome .
https://github.com/COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome
Last synced: 11 May 2025
https://github.com/bcgsc/nanosim
Nanopore sequence read simulator
genome nanopore-sequencing oxford-nanopore simulator transcriptome
Last synced: 16 May 2025
https://github.com/bcgsc/NanoSim
Nanopore sequence read simulator
genome nanopore-sequencing oxford-nanopore simulator transcriptome
Last synced: 06 May 2025
https://github.com/mortazavilab/TALON
Technology agnostic long read analysis pipeline for transcriptomes
oxford-nanopore pacbio transcript-quantification transcriptome
Last synced: 06 May 2025
https://github.com/greenelab/pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
analysis cancer classifier gene-expression machine-learning methodology pancancer tcga tool transcriptome
Last synced: 05 May 2025
https://github.com/jminnier/startapp
The START App: R Shiny Transcriptome Analysis Resource Tool
bioinformatics genome-biology r rna-seq shiny shiny-apps transcriptome visualization
Last synced: 17 Mar 2025
https://github.com/jminnier/STARTapp
The START App: R Shiny Transcriptome Analysis Resource Tool
bioinformatics genome-biology r rna-seq shiny shiny-apps transcriptome visualization
Last synced: 06 May 2025
https://github.com/federicomarini/genetonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
bioconductor bioconductor-package data-exploration data-visualization functional-enrichment-analysis gene-expression gui pathway-analysis r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome transcriptomics user-friendly
Last synced: 13 Apr 2025
https://github.com/bcgsc/mavis
Merging, Annotation, Validation, and Illustration of Structural variants
bioinformatics genomics python structural-variation transcriptome visualization
Last synced: 03 Jan 2025
https://github.com/comprna/RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
bioinformatics clustering genomics nanopore rna-seq transcriptome
Last synced: 06 May 2025
https://github.com/federicomarini/pcaexplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
bioconductor principal-components r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome user-friendly
Last synced: 13 Apr 2025
https://github.com/drostlab/mytai
Evolutionary Transcriptomics with R
biological-processes conservation evo-devo evolution evolutionary-transcriptomics expression-profiles gene-expression gene-sets mytai r studies-transcriptomes transcriptome
Last synced: 05 Apr 2025
https://github.com/bcgsc/transabyss
de novo assembly of RNA-seq data using ABySS
bioinformatics rna-seq transcriptome transcriptome-assembly
Last synced: 07 May 2025
https://github.com/charles-plessy/tutorial
Various tutorials on how to analyse transcriptomic data.
cage edger fantom transcriptome tutorial
Last synced: 28 Apr 2025
https://github.com/charles-plessy/cager
Mirror of Bioconductor's CAGEr package repository
bioconductor cage r transcriptome
Last synced: 28 Apr 2025
https://github.com/k8hertweck/ycs
sugarcane transcriptome
slurm sugarcane transcriptome trinity
Last synced: 03 Mar 2025
https://github.com/k3yavi/caviar
Comparing 3' single-end sequencing for genome and txome
genome genome-pile-up transcriptome
Last synced: 16 Mar 2025
