Projects in Awesome Lists tagged with transposable-elements
A curated list of projects in awesome lists tagged with transposable-elements .
https://github.com/parklab/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
illumina linked-reads mobile-element-insertion nanopore pacbio transposable-elements
Last synced: 14 Mar 2025
https://github.com/robsyme/nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
bioinformatics genomics nextflow transposable-elements
Last synced: 14 Apr 2025
https://github.com/giffordlabcvr/DIGS-tool
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
blast-searches comparative-genomics data-mining evolution genome-annotation molecular-genetics paleovirology sequence-similarity similarity-search transposable-elements
Last synced: 23 Mar 2025
https://github.com/lkremer/tecov
A pipeline to to determine the repeat content of genes and their neighboring regions.
bioinformatics-pipeline genome genomics repeatmasker transposable-elements
Last synced: 09 May 2025
https://github.com/darcyabjones/pante
A pipeline for predicting and masking transposable elements in multiple genomes.
bioinformatics genomics masking-transposable-elements multiple-genomes non-coding-rna repeatmasker repeatmodeler transposable-elements
Last synced: 17 Jan 2026
https://github.com/Marcos-Fernando/AnnoTEP
AnnoTEP - a platform for the annotation of transposable elements in plants
bioinformatics bioinformatics-pipeline docker-image gui plants transposable-elements website
Last synced: 25 Oct 2025
https://github.com/mptrsen/mobilome
TE annotation pipeline and analysis scripts for the insect mobilome publication by Petersen et al.
analysis annotation comparative-genomics transposable-elements
Last synced: 25 Jul 2025
https://github.com/jlmaier12/proactive
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
bacteriophage metagenomics mobile-genetic-elements pattern-matching prophages read-mapping sequencing-coverage structural-variants transposable-elements
Last synced: 22 Feb 2026
https://github.com/k8hertweck/flypopgenomics
transposon and LD analysis for replicated experimental evolution fruit fly populations
drosophila genomics ldx popoolation transposable-elements
Last synced: 21 Aug 2025
https://github.com/k8hertweck/repipe
characterization of TEs from low-coverage genomic sequence data
Last synced: 09 Sep 2025