https://github.com/jodyphelan/tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

drug-resistance mycobacterium mycobacterium-tuberculosis ngs tuberculosis

Last synced: 01 Apr 2026

https://github.com/AiAiHealthcare/ProjectAiAi

AiAi.care project is teaching computers to "see" chest X-rays and interpret them how a human Radiologist would. We are using 700,000 Chest X-Rays + Deep Learning to build an FDA 💊 approved, open-source screening tool for Tuberculosis and Lung Cancer. After an MRMC clinical trial, AiAi CAD will be distributed for free to emerging nations, charitable hospitals, and organizations like WHO 🌏 We will also release our pretrained models and weights as Medical Imagenet.

charity convolutional-neural-networks ct-scans cxr-lungs deep-learning dicom fda keras lung-cancer lung-cancer-detection postero-anterior pytorch radiologist radiology scikit-image teleradiology tensorflow tuberculosis x-ray

Last synced: 09 Jul 2025

https://github.com/seabbs/gettbinr

An R package for accessing and summarising the World Health Organisation Tuberculosis data.

binder-ready data eda package r rstats shiny tb-data tb-incidence-rates tuberculosis who world-health-organization

Last synced: 06 Sep 2025

https://github.com/mbhall88/classification_benchmark

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

bioinformatics contamination sequence-analysis taxonomic-classification tuberculosis

Last synced: 11 Apr 2025

https://github.com/wejlab/tbsignatureprofiler

Profile RNA-seq data using published TB gene signatures

bioconductor-package biomarkers gene-signatures tuberculosis

Last synced: 12 Mar 2026

https://github.com/seabbs/thesis

PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?

bcg bookdown epidemiology open-science reproducible-research rstats thesis thesisdown tuberculosis

Last synced: 06 Sep 2025

https://github.com/hasibzunair/tuberculosis-severity

10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.

3d-convolutional-network classification deep-learning medical-imaging tuberculosis volumetric-data

Last synced: 25 Apr 2025

https://github.com/mbhall88/head_to_head_pipeline

Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.

bioinformatics clustering diagnostics drug-resistance illumina nanopore pipeline snakemake transmission tuberculosis

Last synced: 09 Jul 2025

https://github.com/mbhall88/thesis

My PhD thesis

bacterial-genomes basecalling bioinformatics drug-resistance-prediction genome-graphs nanopore-sequencing phd-thesis transmission-clustering tuberculosis

Last synced: 13 Oct 2025

https://github.com/seabbs/directeffbcgpolicychange

Estimating the effect of the 2005 change in BCG policy in England: A retrospective cohort study

bcg epidemiology rstats tuberculosis united-kingdom

Last synced: 10 Oct 2025

https://github.com/combat-tb/vcf2neo

A tool to import SnpEff annotated files to a Neo4j Graph database

graph-database neo4j-database py2neo snpeff tuberculosis variant-calling

Last synced: 19 Apr 2025

https://github.com/a-r-j/tb-resources

List of online databases and resources for Mycobacterium Tuberculosis

computational-biology curated drug-discovery genomics genomics-data genomics-data-sets integration list mycobacterium mycobacterium-tuberculosis omics proteomics proteomics-data proteomics-data-integration proteomics-datasets transcriptomics transcriptomics-data transcriptomics-data-integration transcriptomics-datasets tuberculosis

Last synced: 18 Mar 2026

https://github.com/combat-tb/tbvcfreport

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

combat-tb-neodb galaxy-project neo4j snpeff tuberculosis variant-annotations vcf vcf-files

Last synced: 24 Feb 2026

https://github.com/fperdigon/BacillusMarker

BacillusMarker is an aplication to easy mark bacillus of tuberculose.

labeling-tool pyside python tuberculosis

Last synced: 14 Mar 2025

https://github.com/imperialcollegelondon/ltbiscreeningproject

:tv: Latent tuberculosis screening cost-effectiveness analysis

cost-effectiveness decisiontree tuberculosis

Last synced: 17 Jul 2025

https://github.com/seabbs/tbinenglanddataclean

Cleans and Munges Tuberculosis and Demographic Data for England

data-cleaning demographics england incidence tuberculosis

Last synced: 22 Jun 2025

https://github.com/abhi18av/ljmu_masters_dissertation

drug-resistance-prediction h2oai machine-learning python tuberculosis

Last synced: 07 May 2026

https://github.com/combat-tb/combat-tb-neodb

:whale: combatTB Neo4j Database

apoc bioinformatics cdc1551 docker graph-database h37rv neo4j tuberculosis

Last synced: 29 Apr 2026

https://github.com/combat-tb/tb2neo

A tool to aggregate and load TB data to Neo4j

genome-annotation gff3 neo4j py2neo tuberculosis

Last synced: 16 Apr 2026

https://github.com/seabbs/estzoonotictb

Explore, Visualise and Estimate the Global Zoonotic Tuberculosis Burden

bovine-tb data estimation package rstats tuberculosis visualisation zoonotic-tb

Last synced: 28 Feb 2026

https://github.com/seabbs/etsmissing

Explore and evaluate the mechanisms for missing data in the Enhanced Tuberculosis Surveillance system.

analysis-package bcg ets public-health-england rstats surveillance tuberculosis

Last synced: 28 Feb 2026

https://github.com/seabbs/explorebcgonoutcomes

Analysis to explore the association of BCG vaccination and TB outcomes.

bcg data-analysis regression rstats tuberculosis

Last synced: 23 Feb 2026

https://github.com/imperialcollegelondon/tb-vsa-pipeline

pipeline sequencing tuberculosis

Last synced: 12 Apr 2025

https://github.com/meinhere/ta-kk

Proyek Akhir Mata Kuliah Kecerdasan Komputasional - Klasifikasi Lokasi Tuberculosis Menggunakan Metode Random Forest

computational-intelligence flask python random-forest-classifier tuberculosis

Last synced: 09 May 2026

https://github.com/seabbs/hpru-blog-post-gettbinr

A blog post on getTBinR for the HPRU Evaluation of Interventions blog

bcg gettbinr openscience rstats tuberculosis

Last synced: 02 Feb 2026

https://github.com/seabbs/intro_to_tb_models

A shiny app recreating the models used in the practicals for the Intro to TB modelling course at the 2017 Union Conference

course docker infectious-diseases modelling shiny tb-models tuberculosis

Last synced: 17 May 2026

https://github.com/mbhall88/qmrl-slides

Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022

bioinformatics drug-resistance-prediction genomics nanopore slides transmission-clustering tuberculosis variant-calling

Last synced: 18 Mar 2025

https://github.com/combat-tb/explorer

COMBAT-TB Explorer Web Application

bioinformatics neo4j tuberculosis

Last synced: 31 Aug 2025

https://github.com/combat-tb/combat-tb.github.io

COMBAT-TB Website

bioinformatics galaxy-project neo4j-database south-africa tuberculosis workflow-management-system

Last synced: 24 Aug 2025

https://github.com/kklot/endtb

TB models in TMB

epidemic modelling simulation tb tmb tuberculosis

Last synced: 12 Apr 2025

https://github.com/seabbs/interact-school-vs-neonatal-bcg

A shiny app to visualise the trade-offs between school age and neonatal BCG vaccination

bcg dynamic-model infectious-diseases public-health rstats shiny tuberculosis

Last synced: 14 Apr 2026

https://github.com/aofarrel/clockwork-wdl

WDLization of clockwork

bioinformatics-pipeline tuberculosis

Last synced: 23 Feb 2026

https://github.com/seabbs/assessbcgpolicychange

Assessing the evidence for the 2005 BCG policy change in England

bcg bcg-vaccine binder-ready epidemiology policy-evaluation reproducible-research rstats science-research travis-ci tuberculosis vaccines

Last synced: 14 Apr 2026

https://github.com/dmoayad/tuberculosis-classification-ai

Tuberculosis X-ray Classification with training a computer vision model

artificial-intelligence computer-vision data data-science machine-learning medical-image-processing python tuberculosis tuberculosis-classification tuberculosis-detection

Last synced: 27 Apr 2026

https://github.com/seabbs/what-do-we-really-know-about-bcg

The slides for a talk given at the UK Clinical Vaccine Network Conference 2019 on the 14/06/19

bcg epidemiology open-source public-health slides talk tuberculosis vaccination

Last synced: 01 Mar 2026