Ecosyste.ms: Awesome

https://github.com/AiAiHealthcare/ProjectAiAi

AiAi.care project is teaching computers to "see" chest X-rays and interpret them how a human Radiologist would. We are using 700,000 Chest X-Rays + Deep Learning to build an FDA 💊 approved, open-source screening tool for Tuberculosis and Lung Cancer. After an MRMC clinical trial, AiAi CAD will be distributed for free to emerging nations, charitable hospitals, and organizations like WHO 🌏 We will also release our pretrained models and weights as Medical Imagenet.

charity convolutional-neural-networks ct-scans cxr-lungs deep-learning dicom fda keras lung-cancer lung-cancer-detection postero-anterior pytorch radiologist radiology scikit-image teleradiology tensorflow tuberculosis x-ray

Last synced: 20 Nov 2024

https://github.com/mbhall88/classification_benchmark

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

bioinformatics contamination sequence-analysis taxonomic-classification tuberculosis

Last synced: 13 Oct 2024

https://github.com/hasibzunair/tuberculosis-severity

10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.

3d-convolutional-network classification deep-learning medical-imaging tuberculosis volumetric-data

Last synced: 10 Nov 2024

https://github.com/mbhall88/head_to_head_pipeline

Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.

bioinformatics clustering diagnostics drug-resistance illumina nanopore pipeline snakemake transmission tuberculosis

Last synced: 24 Nov 2024

https://github.com/mbhall88/thesis

My PhD thesis

bacterial-genomes basecalling bioinformatics drug-resistance-prediction genome-graphs nanopore-sequencing phd-thesis transmission-clustering tuberculosis

Last synced: 13 Oct 2024

https://github.com/combat-tb/vcf2neo

A tool to import SnpEff annotated files to a Neo4j Graph database

graph-database neo4j-database py2neo snpeff tuberculosis variant-calling

Last synced: 08 Nov 2024

https://github.com/fperdigon/BacillusMarker

BacillusMarker is an aplication to easy mark bacillus of tuberculose.

labeling-tool pyside python tuberculosis

Last synced: 26 Oct 2024

https://github.com/combat-tb/tbvcfreport

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

combat-tb-neodb galaxy-project neo4j snpeff tuberculosis variant-annotations vcf vcf-files

Last synced: 11 Oct 2024

https://github.com/imperialcollegelondon/ltbiscreeningproject

:tv: Latent tuberculosis screening cost-effectiveness analysis

cost-effectiveness decisiontree tuberculosis

Last synced: 06 Nov 2024

https://github.com/a-r-j/tb-resources

List of online databases and resources for Mycobacterium Tuberculosis

computational-biology curated drug-discovery genomics genomics-data genomics-data-sets integration list mycobacterium mycobacterium-tuberculosis omics proteomics proteomics-data proteomics-data-integration proteomics-datasets transcriptomics transcriptomics-data transcriptomics-data-integration transcriptomics-datasets tuberculosis

Last synced: 20 Dec 2024

https://github.com/abhi18av/ljmu_masters_dissertation

drug-resistance-prediction h2oai machine-learning python tuberculosis

Last synced: 09 Nov 2024

https://github.com/combat-tb/combat-tb-neodb

:whale: combatTB Neo4j Database

apoc bioinformatics cdc1551 docker graph-database h37rv neo4j tuberculosis

Last synced: 08 Nov 2024

https://github.com/combat-tb/tb2neo

A tool to aggregate and load TB data to Neo4j

genome-annotation gff3 neo4j py2neo tuberculosis

Last synced: 08 Nov 2024

https://github.com/michelmf/projeto_tb

Applying machine learning models to detect tuberculosis during screening process.

boosting-tree classification-model data-mining data-visualization machine-learning python tuberculosis

Last synced: 04 Dec 2024

https://github.com/imperialcollegelondon/tb-vsa-pipeline

pipeline sequencing tuberculosis

Last synced: 06 Nov 2024

https://github.com/mbhall88/qmrl-slides

Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022

bioinformatics drug-resistance-prediction genomics nanopore slides transmission-clustering tuberculosis variant-calling

Last synced: 24 Nov 2024

https://github.com/combat-tb/combat-tb.github.io

COMBAT-TB Website

bioinformatics galaxy-project neo4j-database south-africa tuberculosis workflow-management-system

Last synced: 08 Nov 2024

https://github.com/combat-tb/explorer

COMBAT-TB Explorer Web Application

bioinformatics neo4j tuberculosis

Last synced: 08 Nov 2024