Projects in Awesome Lists tagged with visium
A curated list of projects in awesome lists tagged with visium .
https://github.com/broadinstitute/Tangram
Spatial alignment of single cell transcriptomic data.
computational-biology gene-expression scrna-seq snrna-seq spatial-data visium
Last synced: 20 Apr 2025
https://github.com/broadinstitute/tangram
Spatial alignment of single cell transcriptomic data.
computational-biology gene-expression scrna-seq snrna-seq spatial-data visium
Last synced: 12 Apr 2025
https://github.com/lieberinstitute/spatiallibd
Code for the spatialLIBD R/Bioconductor package and shiny app
10xgenomics bioconductor golem rstats shiny spatial-transcriptomics spatialexperiment spatiallibd visium
Last synced: 05 Apr 2025
https://github.com/lieberinstitute/humanpilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
10xgenomics analysis biorxiv brain dlpfc human rstats spatial-transcriptomics visium
Last synced: 23 Mar 2025
https://github.com/lieberinstitute/spatialdlpfc
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
bioconductor dlpfc rstats spatial-transcriptomics spatialdlpfc transcriptomics visium visium-spg
Last synced: 23 Mar 2025
https://github.com/lieberinstitute/vistoseg
Image processing pipeline for spatial projects
matlab spatial transcriptomics visium
Last synced: 07 May 2025
https://github.com/lieberinstitute/visium_spg_ad
Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.
alzheimers-disease bioconductor rstats spatial-transcriptomics transcriptomics visium visium-spg visium-spg-ad
Last synced: 23 Mar 2025
https://github.com/gurbaaz27/cs690a-clustering-spatial-transcriptomics-data
Course Assignment on Clustering of Spatial Transcriptomics Data
cancer-genomics clustering computational-biology computational-genomics deep-learning gene-expression k-means-clustering leiden-algorithm louvain-algorithm rna-seq spatial-transcriptomics transcriptomics variational-autoencoder variational-autoencoders variational-inference visium
Last synced: 11 Apr 2025
https://github.com/lieberinstitute/visiumstitched_brain
Example human brain data used for https://research.libd.org/visiumStitched/.
bioconductor rstats spatial spatiallibd transcriptomics visium visiumstitched
Last synced: 23 Mar 2025
https://github.com/lieberinstitute/visiumstitched
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
10xgenomics bioconductor rstats spatial-transcriptomics spatialexperiment spatiallibd visium
Last synced: 23 Mar 2025