Projects in Awesome Lists tagged with xenium
A curated list of projects in awesome lists tagged with xenium .
https://github.com/camlab-bioml/rakaia
Scale interactive spatial omics in the browser to thousands of images | https://rakaia.io/
browser histology imaging-mass-cytometry multiplexed-imaging omics spatial-analysis spatial-biology spatial-data spatial-proteomics spatial-transcriptomics viewer visium xenium zarr
Last synced: 08 Mar 2026
https://github.com/unikill066/xenium_cell_segmentation
End-to-end pipeline for spinal-cord microscopy segmentation with Cellpose, tiling, and mask stitching.
cell-segmentation cellpose cellpose-segmentation xenium
Last synced: 22 Jun 2025
https://github.com/sebastian-gregoricchio/dauyey_velds__brca_single_cell_transcriptomic_atlas_codes
Codes associated to the analyses performed in Dauyey Velds et al., "A spatial single-cell transcriptomic atlas of metastatic breast cancer progression".
breast-cancer metastatic-breast-cancer spatial-transcriptomics spatial-transcriptomics-analyses xenium
Last synced: 31 May 2026
https://github.com/hutaobo/cell-gps
Cell-GPS is the Python package and reference implementation for Cophenetic Spatial Topology Embedding (COSTE), a spatial topology analysis framework for spatial omics data.
bioinformatics data-visualization python scanpy single-cell spatial-analysis spatial-omics spatial-transcriptomics visium xenium
Last synced: 07 Jun 2026
