Projects in Awesome Lists by 4ment
A curated list of projects in awesome lists by 4ment .
https://github.com/4ment/seqotron
Alignment editor for Mac OS X
macosx phylogenetics sequence-viewer tree-viewer
Last synced: 11 Apr 2025
https://github.com/4ment/phylostan
Phylogenetic inference using Stan
bayes hmc phylogenetics pystan stan variational-inference
Last synced: 26 Jul 2025
https://github.com/4ment/torchtree
A probabilistic framework in PyTorch for phylogenetic models
phylogenetics pytorch variational-inference
Last synced: 25 Jun 2025
https://github.com/4ment/physher
A multi-algorithmic framework for phylogenetic inference
bayesian-inference c genetic-algorithm maximum-likelihood mcmc phylogenetics variational-inference
Last synced: 21 Aug 2025
https://github.com/4ment/marginal-experiments
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
data data-visualization marginal-likelihood phylogenetics
Last synced: 11 Apr 2025
https://github.com/4ment/gradient-benchmark
automatic/analytical differentiation benchmark
bayesian-inference gradient-computation phylogenetics phylostan pytorch stan tensorflow torchtree variational
Last synced: 11 Apr 2025
https://github.com/4ment/torchtree-bito
beagle bito phylogenetics pybind11 python torchtree
Last synced: 03 Nov 2025
https://github.com/4ment/skyplotr
beast coalescent ggplot2 mcmc visualization
Last synced: 07 Oct 2025
https://github.com/4ment/flc
Local clock model using relaxed and strict clocks
bayesian beast2 mcmc phylogenetics
Last synced: 11 Apr 2025
https://github.com/4ment/reassortment-plot
R script to assess reassortment from posterior samples of trees using multidimensional scaling
Last synced: 03 Nov 2025
https://github.com/4ment/torchtree-tensorflow
phylogenetics pytorch tensorflow torchtree
Last synced: 20 Apr 2026
https://github.com/4ment/torchtree-experiments
phylogenetics physher pytorch torchtree variational-bayes
Last synced: 29 Apr 2026
https://github.com/4ment/laplus
Laplace approximation of the marginal likelihood
c laplace-approximation marginal-likelihood
Last synced: 03 Nov 2025
https://github.com/4ment/torchtree-physher
c gradient phylogenetics physher pytorch torchtree
Last synced: 09 Apr 2026
https://github.com/4ment/torchtree-scipy
Package providing extra functionalities from SciPy
phylogenetics python pytorch scipy torchtree
Last synced: 04 Jan 2026
https://github.com/4ment/beaglepy
hms cutie beagle pie
beagle phylogenetics pybind11 python
Last synced: 03 May 2026
https://github.com/4ment/torchtree-plugin-template
A GitHub template for developing a torchtree plugin
python pytorch template template-project torchtree
Last synced: 29 Apr 2026
https://github.com/4ment/aiv-rate-heterogeneity
Avian influenza virus data sets
Last synced: 24 Jan 2026
https://github.com/4ment/cladokit
A minimal, no-frills C++17 library for phylogenetic trees
cpp library phylogenetics tree
Last synced: 08 Aug 2025
https://github.com/4ment/gdp
Genetic Diversity tests using patristic distances
Last synced: 21 Aug 2025