https://github.com/bu-isciii/taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

bacterial-genomes cgmlst mlst outbreak-data-analysis outbreak-detection sequencing wgmlst

Last synced: 05 Apr 2025

https://github.com/bu-isciii/virology_training

This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

Last synced: 28 Jan 2026

https://github.com/bu-isciii/bu-isciii

Our Wiki and main public documentation repository.

bioinformatics bioinformatics-unit documentation

Last synced: 07 Jul 2025

https://github.com/bu-isciii/bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

bacterial-genomes bacterial-wgs-training genome nextflow ngs-analysis outbreak-detection outbreaks sequencing wgs wgs-analysis

Last synced: 10 Feb 2026

https://github.com/bu-isciii/panellowfreq-nf

This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.

low-frequency-variants nextflow-pipeline panel wes

Last synced: 07 Jul 2025

https://github.com/bu-isciii/buisciii-tools

set of helper tools for bu-isciii management of its core services portfolio.

bioinformatics bioinformatics-analysis core-services genomics portfolio services

Last synced: 06 Apr 2026

https://github.com/bu-isciii/iskylims_drylab

django-project iskylims lims ngs ngs-data

Last synced: 04 Jul 2025

https://github.com/bu-isciii/openebench_gmi

Last synced: 06 Feb 2026

https://github.com/bu-isciii/flu_resistance

Repository containing influenza resistance data in JSON format and scripts to generate and update these files from source datasets.

Last synced: 18 Feb 2026

https://github.com/bu-isciii/mirnas-nf

Nextflow pipeline to analyze miRNA-seq data.

Last synced: 03 Feb 2026

https://github.com/bu-isciii/bu-hack-a-isciii

Last synced: 28 Jan 2026

https://github.com/bu-isciii/sanger_script

Script for sanger sequencing files delivery.

Last synced: 30 Jan 2026

https://github.com/bu-isciii/all_yml_files

Compilation of all the YAML files used in the unit (both for backup and sharing purposes)

Last synced: 25 Feb 2026

https://github.com/bu-isciii/introduction_to_hpc

In this training course you will find theory and practice material for introducing yourself to the basics of high-performance computing (HPC) environment.

Last synced: 15 Feb 2026

https://github.com/bu-isciii/wgmlst-nf

Last synced: 03 Feb 2026

https://github.com/bu-isciii/galaxy_virologist_training

Galaxy training for virology profiles

Last synced: 20 Jan 2026

https://github.com/bu-isciii/opentrons_covid19

Documentation and scripts for implementation of station A, B and C

Last synced: 20 Jan 2026

https://github.com/bu-isciii/relecov_biohackaton

Last synced: 20 Jan 2026

https://github.com/bu-isciii/iskylims_clinic

Last synced: 02 Jul 2025

https://github.com/bu-isciii/centos7_base_image

Static CentOS7 image with updated development tools. It speeds up the creation of containers based on CentOS7.

Last synced: 10 Feb 2026

https://github.com/bu-isciii/pampucaller

Open source R package for variant calling in deep sequencing of pcr-amplicons. It can be applied for detection of mosaicism in any sample including human samples or viral subpopulations.

Last synced: 04 Jul 2025

https://github.com/bu-isciii/bacterial_qc

Last synced: 14 Jun 2025

https://github.com/bu-isciii/download_bigsdb_api

Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

alleles bigsdb bigsdb-installation cgmlst-genes python3 rest-api

Last synced: 13 Oct 2025