Projects in Awesome Lists by BioJulia
A curated list of projects in awesome lists by BioJulia .
https://github.com/biojulia/automa.jl
A julia code generator for regular expressions
Last synced: 15 May 2025
https://github.com/BioJulia/BioSequences.jl
Biological sequences for the julia language
bioinformatics biojulia biological-sequences biology
Last synced: 22 Jan 2026
https://github.com/biojulia/biosequences.jl
Biological sequences for the julia language
bioinformatics biojulia biological-sequences biology
Last synced: 12 Apr 2025
https://github.com/BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biojulia biology julia pdb protein-structure structural-bioinformatics structural-biology
Last synced: 22 Jul 2025
https://github.com/biojulia/biostructures.jl
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biojulia biology julia pdb protein-structure structural-bioinformatics structural-biology
Last synced: 30 Jan 2026
https://github.com/biojulia/genomegraphs.jl
A modern genomics framework for julia
bio bioinformatics bioinformatics-analysis biology genome-assembly genome-graph genome-sequencing genomes genomics julia
Last synced: 11 Apr 2025
https://github.com/biojulia/fastx.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
bio biojulia fasta fasta-files fasta-format fastq fastq-files fastq-format file-format julia parsing
Last synced: 05 Apr 2025
https://github.com/biojulia/bioalignments.jl
Sequence alignment tools
bam-files bioinformatics biojulia biology dna-sequences high-throughput-sequencing sam-files sequence-alignment sequence-analysis smith-waterman-alignment
Last synced: 15 Apr 2025
https://github.com/biojulia/biomakie.jl
Plotting and interface tools for biology.
Last synced: 08 Apr 2025
https://github.com/biojulia/popgen.jl
Population Genetics in Julia
fst genetics genomics microsatellites popgen snps structure
Last synced: 15 Apr 2025
https://github.com/biojulia/intervaltrees.jl
A data structure for efficient manipulation of sets of intervals
Last synced: 15 Apr 2025
https://github.com/biojulia/biofmtspecimens
A collection of bioinformatics file format specimens to test against
Last synced: 15 Apr 2025
https://github.com/biojulia/geneticvariation.jl
Datastructures and algorithms for working with genetic variation
bioinformatics biology julia mutation polymorphism snps variation
Last synced: 07 Sep 2025
https://github.com/biojulia/genomicfeatures.jl
Tools for genomic features in Julia.
Last synced: 08 Apr 2025
https://github.com/biojulia/biosymbols.jl
Nucleic and amino acid primitive types
amino-acids bioinformatics biojulia biological-data-analysis biology computational-biology nucleic-acids nucleotides
Last synced: 15 Apr 2025
https://github.com/biojulia/kmers.jl
Efficient types and methods for K-mer biosequences
Last synced: 07 Oct 2025
https://github.com/biojulia/xam.jl
Parse and process SAM and BAM formatted files
bam bam-files bam-format bioinformatics biojulia sam sam-files sam-format
Last synced: 15 Apr 2025
https://github.com/biojulia/biocore.jl
Core types and interfaces for BioJulia packages
Last synced: 15 Apr 2025
https://github.com/biojulia/bioservices.jl
Julia interface to APIs for various bio-related web services
Last synced: 27 Aug 2025
https://github.com/biojulia/singlecellprojections.jl
Analysis of Single Cell Expression data in Julia
Last synced: 15 Apr 2025
https://github.com/biojulia/memoryviews.jl
Simple, low-level views into memory in Julia
Last synced: 28 Aug 2025
https://github.com/biojulia/substitutionmodels.jl
Biological Sequence Substitution Models for Julia
bioinformatics julia phylogenetics substitution-models
Last synced: 22 Apr 2025
https://github.com/biojulia/genomicannotations.jl
bioinformatics biology genbank genes genome-annotation gff3 julia
Last synced: 13 Apr 2025
https://github.com/biojulia/contributing
Documentation, guidelines, and policy on contributing to all BioJulia repositories
Last synced: 03 Feb 2026
https://github.com/biojulia/gff3.jl
bioinformatics gff3 gff3-files gff3-format
Last synced: 15 Apr 2025
https://github.com/biojulia/formatspecimens.jl
Biological file format specimens for testing packages, and functions to assist in testing.
Last synced: 20 Oct 2025
https://github.com/biojulia/proteinsecondarystructures.jl
Wrapper to protein secondary structure calculation packages
Last synced: 15 Apr 2025
https://github.com/biojulia/biogenerics.jl
Generic methods, types and modules for the BioJulia ecosystem.
Last synced: 15 Apr 2025
https://github.com/biojulia/indexablebitvectors.jl
Fully indexable dictionaries - access/rank/select operations
Last synced: 11 Apr 2025
https://github.com/biojulia/readdatastores.jl
Datastores for reads, not your papa's FASTQ files.
bam-files bam-format bioinformatics bioinformatics-data biojulia biology fastq fastq-files fastq-format files format genomics genomics-data sam-bam sam-file sam-files sequencing storage
Last synced: 12 Oct 2025
https://github.com/biojulia/biofetch.jl
Easily fetch biological sequences from online sources
Last synced: 11 Sep 2025
https://github.com/biojulia/kmeranalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
biojulia kmer kmer-composition kmer-counting kmer-distribution kmer-frequency-count kmer-spectra kmers
Last synced: 15 Apr 2025
https://github.com/biojulia/twobit.jl
Support for working with 2Bit formatted sequence data files
Last synced: 15 Apr 2025
https://github.com/biojulia/mmtf.jl
A Julia package to read and write MMTF files
bioinformatics julia-package mmtf pdb rcsb
Last synced: 15 Feb 2026
https://github.com/biojulia/phylogenies.jl
The BioJulia package for working with phylogenetic trees and geneologies.
bioinformatics biology evolution phylogenetic-trees phylogenetics phylogenomics
Last synced: 29 Jun 2025
https://github.com/biojulia/sequencevariation.jl
Biological sequence variation
biojulia biological-sequences biology variant-calling
Last synced: 15 Apr 2025
https://github.com/BioJulia/BioMarkovChains.jl
Representing biological sequences as Markov chains
bioinformatics biology dna julia julialang markov-chain
Last synced: 17 Aug 2025
https://github.com/biojulia/biomarkovchains.jl
Representing biological sequences as Markov chains
bioinformatics biology dna julia julialang markov-chain
Last synced: 11 Dec 2025
https://github.com/biojulia/popgencore.jl
Core utilities for PopGen.jl, including the PopData type and file IO
Last synced: 15 Apr 2025
https://github.com/biojulia/ncbiblast.jl
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
Last synced: 15 Apr 2025
https://github.com/biojulia/talks
Slides and materials for talks about BioJulia
Last synced: 08 Oct 2025
https://github.com/biojulia/bigwig.jl
bigwig bigwig-files bigwig-reader bioinformatics
Last synced: 15 Apr 2025
https://github.com/biojulia/naturalselection.jl
A package containing methods for looking at the effects of natural selection
Last synced: 23 Jun 2025
https://github.com/biojulia/kwaymerges.jl
Implementation of k-way merge algorithms in Julia
Last synced: 13 Sep 2025
https://github.com/biojulia/kmeranalysismakie.jl
Makie recpies for visualising KmerAnalysis types and results.
Last synced: 19 Mar 2026
https://github.com/biojulia/pairwisemappingformat.jl
Parser for the PAF format in bioinformatics
Last synced: 06 Jul 2025
https://github.com/biojulia/wahvectors.jl
Compress bit vectors using the Word Aligned Hybrid method.
Last synced: 07 Jan 2026
https://github.com/biojulia/graphicalfragmentassembly.jl
Parser for the GFA format
Last synced: 19 Mar 2026
https://github.com/biojulia/abstracts
Abstracts for conference talks, posters, and papers
Last synced: 07 Jan 2026
https://github.com/biojulia/xamauxdata.jl
Read auxiliary data fields in SAM, GFA and PAF formats
Last synced: 20 Feb 2026
https://github.com/biojulia/bsg.jl
A wrapper for the BSG library and suite of tools
Last synced: 02 Feb 2026
https://github.com/biojulia/biojulia-stickers
Stickers and logos for BioJulia packages
Last synced: 07 Jan 2026
https://github.com/biojulia/community-issues
Repo to track BioJulia organisation level issues.
Last synced: 15 Feb 2026
https://github.com/biojulia/cigarstrings.jl
Read and write Concise Idiosyncratic Gapped Alignment Reports.
Last synced: 19 Mar 2026
https://github.com/biojulia/biojuliatemplate.jl
Template package for BioJulia
Last synced: 07 Jan 2026