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An open API service indexing awesome lists of open source software.

Projects in Awesome Lists by BlueBrain

A curated list of projects in awesome lists by BlueBrain .

https://github.com/BlueBrain/HighFive

HighFive - Header-only C++ HDF5 interface

Last synced: 01 May 2025

https://github.com/bluebrain/highfive

HighFive - Header-only C++ HDF5 interface

Last synced: 08 Apr 2025

https://github.com/bluebrain/nexus

Blue Brain Nexus - A knowledge graph for data-driven science

knowledge-graph nexus provenance scala shacl

Last synced: 15 May 2025

https://github.com/BlueBrain/nexus

Blue Brain Nexus - A knowledge graph for data-driven science

knowledge-graph nexus provenance scala shacl

Last synced: 26 Mar 2025

https://github.com/BlueBrain/CoreNeuron

Simulator optimized for large scale neural network simulations.

compartmental hpc neural-network neuron neuroscience simulation-framework supercomputing

Last synced: 05 Apr 2026

https://github.com/bluebrain/neuromorphovis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

bbp blender-addon blue-brain-project media-production mesh-reconstruction morphologies morphology-analysis morphology-visualization neural-modeling neurons simulation-based-neuroscience soma-reconstruction visualization

Last synced: 04 Apr 2025

https://github.com/bluebrain/neurom

Neuronal Morphology Analysis Tool

morphologies neurons python

Last synced: 05 Apr 2025

https://github.com/bluebrain/efel

Electrophys Feature Extraction Library

computational-neuroscience electrophysiology neurons neuroscience python

Last synced: 21 Oct 2025

https://github.com/bluebrain/bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

astrocyte brain coronavirus covid19 dti glucose-levels immune-system molecular-biology neuroimaging neuron neurosimulation python raytracing rendering-engine sars-cov-2 science vasculature viral-infection virology virus

Last synced: 05 Apr 2025

https://github.com/bluebrain/nmodl

Code Generation Framework For NEURON MODeling Language

code-generation compilers dsl hpc neuron-simulator neuroscience nmodl

Last synced: 04 Apr 2025

https://github.com/bluebrain/tide

Tiled Interactive Display Environment

visualization

Last synced: 14 May 2025

https://github.com/bluebrain/vessmorphovis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.

bbp blender-addon blood-vessels blood-vessels-visualization blue-brain-project meshing morphology simulation-based-neuroscience vascular-flow vascular-networks visualization

Last synced: 14 May 2025

https://github.com/bluebrain/mooc-neurons-and-synapses-2017

Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open Course

Last synced: 14 May 2025

https://github.com/bluebrain/neurots

Topological Neuron Synthesis

morphology neuroscience

Last synced: 28 Feb 2025

https://github.com/bluebrain/tmd

A python package for the topological analysis of neurons.

analyze morphology morphology-analysis

Last synced: 26 Feb 2025

https://github.com/bluebrain/bluima

Natural Language Processing Toolkit for Neuroscience

Last synced: 19 Sep 2025

https://github.com/bluebrain/morphio

A python and C++ library for reading and writing neuronal morphologies

glia mitochondria morphology neuron neurons python reticulum

Last synced: 01 Mar 2025

https://github.com/bluebrain/simulationtutorials

Public tutorials around electrophysiological simulations

computational-neuroscience course-materials tutorials

Last synced: 08 Oct 2025

https://github.com/bluebrain/deflect

C++ library for building applications to stream pixels to Tide

c-plus-plus tide

Last synced: 06 Oct 2025

https://github.com/bluebrain/ultraliser

Reconstruction of watertight meshes and annotated volumes of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

astrocyte mesh morphology neuron neurons vasculature volume

Last synced: 14 May 2025

https://github.com/bluebrain/brion

Blue Brain C++ File IO Library

synapse

Last synced: 04 Oct 2025

https://github.com/bluebrain/snap

The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

analysis modeling simulation

Last synced: 14 May 2025

https://github.com/bluebrain/nexus-web

Nexus Web is the interface of Blue Brain Nexus

javascript nexus nodejs react redux server-side-rendering storybook typescript

Last synced: 14 May 2025

https://github.com/bluebrain/atlas-download-tools

Search, download, and prepare brain atlas data.

brain-atlas download search

Last synced: 03 Oct 2025

https://github.com/bluebrain/emodelrunner

Runs cells from stand-alone packages.

Last synced: 06 Oct 2025

https://github.com/bluebrain/bluecellulab

Biologically detailed neural network simulations and analysis API

api biology brain cell circuit connection emodel network neural-network neuron neuroscience python simulation

Last synced: 14 May 2025

https://github.com/bluebrain/bluepymm

Blue Brain Python Cell Model Management

Last synced: 14 May 2025

https://github.com/bluebrain/bluepyefe

BluePyEfe: Blue Brain Python E-feature extraction

Last synced: 14 May 2025

https://github.com/BlueBrain/bluebrain.github.com

API documentation for BlueBrain projects:

api documentation doxygen html

Last synced: 09 Jul 2025

https://github.com/bluebrain/libsonata

A python and C++ interface to the SONATA format

circuit modelling simulation sonata

Last synced: 04 Mar 2025

https://github.com/bluebrain/bluebrain.github.com

API documentation for BlueBrain projects:

api documentation doxygen html

Last synced: 05 Mar 2026

https://github.com/bluebrain/nexus-js

A set of JavaScript libraries built on top of Nexus

isomorphic javascript nexus nodejs sdk typescript

Last synced: 24 Apr 2025

https://github.com/bluebrain/luigi-tools

Extra tools to work with the Luigi library

luigi python

Last synced: 13 Aug 2025

https://github.com/bluebrain/atlas-alignment

Blue Brain multi-modal registration and alignment toolbox

computer-vision deep-learning image-registration machine-learning

Last synced: 16 Jul 2025

https://github.com/bluebrain/astrovascpy

Vasculature blood flow computation and impact of astrocytic endfeet on vessels

bloodflow circuit experiment simulation

Last synced: 14 May 2025

https://github.com/bluebrain/neurodamus

A BBP Simulation Control application for NEURON

brain cellular neuron-simulations simulation

Last synced: 14 May 2025

https://github.com/BlueBrain/Long-range-micro-connectome

BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome

Last synced: 01 May 2025

https://github.com/bluebrain/long-range-micro-connectome

BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome

Last synced: 14 May 2025

https://github.com/bluebrain/neuror

A collection of tools to repair morphologies

Last synced: 14 May 2025

https://github.com/bluebrain/neuroagent

LLM agent made to communicate with different neuroscience related tools

Last synced: 14 May 2025

https://github.com/bluebrain/nexus-bbp-domains

BBP domains specification (schemas, vocabularies)

brain-atlas electrophysiology morphology schema schemas vocabulary

Last synced: 14 May 2025

https://github.com/bluebrain/morphoclass

Neuronal morphology preparation and classification using Machine Learning.

classification-models morphologies

Last synced: 14 May 2025

https://github.com/bluebrain/currentscape

Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.

analyze emodel

Last synced: 21 Oct 2025

https://github.com/bluebrain/nexus-prov

SHACL shapes for W3C PROV-O

provenance schemas shacl w3c

Last synced: 14 May 2025

https://github.com/bluebrain/data-validation-framework

Simple framework to create data validation workflows.

data data-analysis python validation validation-tool

Last synced: 14 May 2025

https://github.com/bluebrain/nexus-search-webapp

The Searchable Knowledge-Graph Application

elasticsearch javascript nexus react

Last synced: 24 Jul 2025

https://github.com/bluebrain/opendata

Last synced: 26 Jan 2026

https://github.com/bluebrain/nexus-python-sdk

A Python API to interface with Nexus REST API

nexus python sdk

Last synced: 28 Jun 2025

https://github.com/bluebrain/blueetl

Multiple simulations analysis tool

analyse neuroscience pandas python simulation simulation-campaign

Last synced: 14 May 2025

https://github.com/bluebrain/voxcell

Tools to work with voxel based brain atlases.

atlas build

Last synced: 14 May 2025

https://github.com/bluebrain/bluepyentity

Manage entities within the knowledge graph

database

Last synced: 14 May 2025

https://github.com/bluebrain/morphology-workflows

Workflows used for morphology processing.

morphology neuroscience

Last synced: 14 May 2025

https://github.com/bluebrain/atlas-annotation

Align and improve brain annotation atlases

Last synced: 03 Aug 2025

https://github.com/bluebrain/emodel-generalisation

Generalisation of electrical models of neurons with MCMC

electrophysiology generalisation mcmc neuron

Last synced: 14 May 2025

https://github.com/bluebrain/bluerecording

Creates weights files for extracellular recording in neurodamus

circuit experiment

Last synced: 14 May 2025

https://github.com/bluebrain/nexus-cli

A Command Line Interface (CLI) for Nexus

cli nexus

Last synced: 10 Mar 2026

https://github.com/bluebrain/sphinx-bluebrain-theme

The Blue Brain Project's documentation theme.

Last synced: 27 Dec 2025

https://github.com/bluebrain/basalt

C++11 Graph Storage library

Last synced: 14 May 2025

https://github.com/bluebrain/bluenaas-subcellular

A web environment for the simulation of brain molecular networks.

database experiment gui subcellular visualization

Last synced: 03 Jul 2025

https://github.com/bluebrain/neurox

A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models

Last synced: 14 May 2025

https://github.com/bluebrain/atlas-direction-vectors

Tools to compute direction vectors in the context of brain atlases.

atlas build

Last synced: 14 May 2025

https://github.com/bluebrain/connectome-manipulator

A connectome manipulation framework for SONATA circuits

build circuit experiment visualize

Last synced: 14 May 2025

https://github.com/bluebrain/diameter-synthesis

Synthesize diameters of neuronal morphologies

morphology neuroscience

Last synced: 14 May 2025

https://github.com/bluebrain/emsim

EMSim is a library that compute different electro-magnetic effects like LPF and VSD.

Last synced: 23 Jul 2025

https://github.com/bluebrain/dmt

Last synced: 27 Apr 2026

https://github.com/bluebrain/morphology-documentation

Morphology Specifications used at BBP

ascii hdf5 morphology neurolucida specification

Last synced: 30 Sep 2025

https://github.com/bluebrain/scholaretl

Scientific literature parsing tools

Last synced: 14 May 2025

https://github.com/bluebrain/atlas-enhancement

Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3

neuroinformatics neuroscience

Last synced: 14 May 2025

https://github.com/bluebrain/vascpy

Python library for reading, writing, and manipulating large-scale vasculature graphs.

Last synced: 14 May 2025

https://github.com/bluebrain/nexus-benchmarks

Nexus Benchmarks

Last synced: 22 Apr 2025

https://github.com/bluebrain/brainmolecularatlas

Brain Molecular Atlas

Last synced: 10 Jun 2025

https://github.com/bluebrain/atlas-interpolation

Interpolate missing section images in gene expression volumes

Last synced: 14 May 2025

https://github.com/bluebrain/cortexetl

Last synced: 14 May 2025