https://github.com/COMBINE-lab/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome

Last synced: 11 May 2025

https://github.com/COMBINE-lab/alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

10x quantification rna-seq rust single-cell single-cell-rna-seq transcriptomics

Last synced: 28 Apr 2025

https://github.com/combine-lab/libgff

Last synced: 27 May 2026

https://github.com/combine-lab/radicl-cpp

Internal library for basic reading and writing of .rad files in C++14

Last synced: 27 May 2026

https://github.com/combine-lab/simplr

Last synced: 01 Apr 2026

https://github.com/combine-lab/lr-rna-sim-scripts

Last synced: 25 May 2026

https://github.com/combine-lab/af-anndata

alevin-fry related processing of AnnData

Last synced: 22 May 2026