Projects in Awesome Lists by CSBiology
A curated list of projects in awesome lists by CSBiology .
https://github.com/csbiology/biofsharp
Open source bioinformatics and computational biology toolbox written in F#.
amino-acids biocontainers bioinformatics bioinformatics-containers biology biostatistics dataprocessing datascience docker fsharp nucleotides sequence-analysis
Last synced: 05 Apr 2025
https://github.com/csbiology/fsharpml
Library for the FSharp friendly usage of the ML.NET project. For documentation visit:
Last synced: 30 Jul 2025
https://github.com/csbiology/fsharpaux
Auxiliary functions and data structures for the F# programming language
fable fable-javascript fable-libraries fsharp
Last synced: 30 Jul 2025
https://github.com/csbiology/fsharpgephistreamer
F# functions for streaming any kind of graph/network data to the network visualization tool gephi
data-analysis exploratory-data-analysis fsharp gephi graph-visualization streaming-graph-data visualization
Last synced: 30 Jul 2025
https://github.com/csbiology/dynamicobj
F# library supporting Dynamic Objects including inheritance in functional style
Last synced: 28 Feb 2026
https://github.com/csbiology/deepstabp
A small web ui and python api service to predict protein melting point temperatures.
Last synced: 30 Jul 2025
https://github.com/csbiology/mzlite
Reader and writer for different mzData formats used in protein mass spectrometry
Last synced: 11 Aug 2025
https://github.com/csbiology/mzio
Generic data model to unify various readers and writers for different formats used in protein mass spectrometry
Last synced: 30 Jul 2025
https://github.com/csbiology/csbscaffold
Basic scaffold for biological data analysis using FSharp
Last synced: 30 Jul 2025
https://github.com/csbiology/tmea
Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
bioinformatics biostatistics deedle enrichment-score f-sharp genes gsea plotly
Last synced: 30 Jul 2025
https://github.com/csbiology/litxml
Small FSharp based DSL for writing literal xml
Last synced: 20 Jun 2025
https://github.com/csbiology/fsdocker
F# Client for Docker Remote API based on Docker.DotNet Project
Last synced: 30 Jul 2025
https://github.com/csbiology/biofsharp.parallel
GPU parallelized functions for BioFSharp
Last synced: 26 Mar 2025
https://github.com/csbiology/biofsharp.imgp
Image recognition and analysis using wavelet transformations
Last synced: 26 Mar 2025
https://github.com/csbiology/dataframe
data frame library for .NET based on ML.NET IDataView
Last synced: 30 Jul 2025
https://github.com/csbiology/biofsharp.biodb
Access to Biological Databases from F#
Last synced: 26 Mar 2025
https://github.com/csbiology/bio-bte-06-l-7
Notebooks, scripts and guides for the computational section of VM 1/ VM 2: Practical class - Molecular Biotechnology II (BIO-BTE-06-L-7)
Last synced: 27 Feb 2026
https://github.com/csbiology/imlp
codebase and dotnet CLI tool for prediction of iMTS-Ls
Last synced: 24 Oct 2025
https://github.com/csbiology/biofsharp.recipes
Recipes for various workflows in computational biology using BioFSharp and its various subprojects
Last synced: 26 Mar 2025
https://github.com/BioFSharp/BioFSharp.Vis_old
Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms
Last synced: 30 Jul 2025
https://github.com/csbiology/obo.net
An OBO file format parser, written in F#.
Last synced: 30 Jul 2025
https://github.com/csbiology/csbiology.github.io
Website for teaching, publications and news from CSB (Computational Systems Biology)
Last synced: 13 Sep 2025
https://github.com/csbiology/imlp_web
codebase of our webservice for prediction of iMTS-Ls
Last synced: 19 Mar 2026
https://github.com/csbiology/bio-mbp-06-u-2
Notebooks for the practical course
Last synced: 26 Mar 2025
https://github.com/csbiology/functionalannotatorweb
Web site for manual curation of functional annotation of different model plant systems
Last synced: 26 Mar 2025
https://github.com/csbiology/bio-bte-10-l-4
Project suggestions for the project work for Wissenschaftliche Programmierung für Biolog*innen (BIO-BTE-10-L-4)
Last synced: 13 Apr 2025
https://github.com/csbiology/fsharpspreadsheetml
FSharp wrapper for Open XML SDK, allowing Excel File reading and manipulation
Last synced: 26 Mar 2025
https://github.com/csbiology/librarytemplate
Dotnet new template for creating library projects with the set of tooling we use
Last synced: 28 Oct 2025
https://github.com/csbiology/tempclass
Package for fitting and classification of short and noisy time series using constrained smoothing splines.
Last synced: 26 Mar 2025
https://github.com/csbiology/bioinf-models-recipes
Bioinformatics - Models and recipes for biological systems
Last synced: 03 Jun 2026
https://github.com/csbiology/fsontology
A toolkit for working with ontology data structures in .NET
Last synced: 16 Oct 2025
https://github.com/csbiology/bio-bte-12-v-4
Notebooks, scripts and guides for the lecture Wissenschaftliche Programmierung für Biolog*innen (BIO-BTE-12-V-4)
Last synced: 30 Jul 2025
https://github.com/csbiology/ontologyenrichment
Command line tool to perform functional annotation and ontology enrichments for Chlamydomonas and Arabidopsis
Last synced: 26 Mar 2025
https://github.com/csbiology/chlamyatlas
Chlamy Atlas is a AI-powered web application which predicts the localizations of proteins from the Green Algae Chlamydomonas reinhardtii.
chlamydomonas data-science ml plant science target tool
Last synced: 20 Jul 2025
https://github.com/csbiology/fsode
Ordinary Differential Equation (ODE) Models in F#
Last synced: 11 Jun 2025